| Publication Date | Author | Title | Journal/Book | Volume/Issue | Focus Area | DOI |
|---|---|---|---|---|---|---|
| 11/01/2011 | Abraham | Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics View Document |
Journal of Proteome Research | Abraham, P., Adams, R., Giannone, R.J., Kalluri, U., Ranjan, P., Erickson, B., Shah, M., Tuskan, G.A., Hettich, R.L. "Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics." Journal of Proteome Research 11:449–460, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1021/pr200851y |
| 10/16/2012 | Abraham | Putting the pieces together: high-performance LC-MS/MS provides network-pathway-, and protein-level perspectives in Populus View Document |
Molecular and Cellular Proteomics | Abraham, P., Giannone, R.J., Adams, R.M., Kalluri, U., Tuskan, G.A., Hettich, R.L., Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus, Molecular and Cellular Proteomics, 12(1), 2012. | Research Area: Biomass Formation and Modification | 10.1074/mcp.M112.022996 mcp.M112.022996 |
| 03/01/2010 | Abulencia | Accessing Microbial Communities Relevant to Biofuels Production | Manual of Industrial Microbiology and Biotechnology | Abulencia, C. B., Wells, S. M., Gray, K. A., Keller, M., Kreps, J.A., Accessing microbial communities relevant to biofuels production. in: R. H.Baltz, J. E.Davies, A. L.Demain (Eds.), Industrial Microbiology and Biotechnology, 3rd Edn, ASM press, Washington DC 2010, pp. 565–576. | Research Area: Biomass Deconstruction and Conversion | ISBN 155581512X |
| 07/01/2010 | Alahuhta | Structure of a fibronectin type III-like module from Chostridium thermocellum View Document |
Acta Crystallographica - Section F | Alahuhta, Markus, Xu Qi, Brunecky, Roman, Adney, William S., Ding, Shi You, Himmel Michael E, Lunin, Vladimir V., Structure of a fibronectin type III-like module from Chostridium thermocellum, Structural Biology and Crystallization Communications, Volume 66, Issue Pt 8, Pages 878-80, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1107/S1744309110022529 |
| 01/01/2011 | Alahuhta | Structure of CBM4 from Clostridium thermodellum cellulase K View Document |
Acta Crystallographica - Section F | Alahuhta, M., Luo, Y., Ding, S-Y, Himmel, M.E., Lunin, V.V., Structure of CBM4 from Clostridium thermocellum cellulase K, Acta Crystallographica, 2011, F67, 527-530. | Research Area: Biomass Deconstruction and Conversion | ISSN 1744-3091 |
| 07/01/2010 | Alahuhta | The Unique Binding Mode of Cellulosomal CBM4 from Clostridium thermocellum Cellobiohydrolase A View Document |
Journal of Microbiology | Alahuhta, M., Xu, Q., Bomble, Y.J., Brunecky, R., Adney, W.S., Ding, S-Y., Himmel, M.E, Lunin, V.V., The Unique Binding Mode of Cellulosomal CBM4 from Clostridium thermocellum Cellobiohydrolase A, Journal of Microbiology,Volume 402, Issue 2, pp 374-387, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.jmb.2010.07.028 |
| 03/01/2013 | Alahuhta | The structure and mode of action of Caldicellulosiruptor bescii family 3 pectate lyase in biomass deconstruction View Document |
Acta Crystallographica - Section D | Alahuhta, M., Brunecky, R., Chandrayan, P., Kataeva, I., Adams, M.W.W., Himmel, M.E., Lunin, V.V., The structure and mode of action of Caldicellulosiruptor bescii family 3 pectate lyase in biomass deconstruction, Acta Crystallographica Section D, D69, 534-539, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.1107/S0907444912050512 |
| 11/01/2011 | Alahuhta | A 1.5 A resolution X-ray structure of the catalytic module of Caldicellulosiruptor bescii family 3 pectate lyase View Document |
Acta Crystallographica - Section F | Alahuhta, M., Chandrayan, P., Kataeva, I., Adams, M. W. W., Himmel, M. E. and Lunin, V. V. (2011). “A 1.5 Å resolution X-ray structure of the catalytic module of Caldicellulosiruptor bescii family 3 pectate lyase.” Acta Crystallographica Section F, 67: 1498–1500 | Research Area: Biomass Formation and Modification | 10.1107/S1744309111038449 |
| 07/01/2010 | Andrews | Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor
saccharolyticus by GeLC-MS2 View Document |
Annnuals of Bioanalytical Chemistry | Muddiman, David, Andrews, Genna, Lewis, Derrick, Notey, Jaspreet, Kelly, Robert, Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor scccharolyticus by GeLC-MS2, Annuals of Bioanalytical Chemistry, 398:377–389, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00216-010-3955-6 |
| 07/01/2010 | Andrews | Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting View Document |
Annnuals of Bioanalytical Chemistry | Muddiman, David, Andrews, Genna, Lewis, Derrick, Notey, Jaspreet, Kelly, Robert, Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting, Annuals of Bioanalytical Chemistry, 398:1, 391-404, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00216-010-3929-8 |
| 07/19/2012 | Archambault-Leger | Integrated analysis of hydrothermal flowthrough pretreatment View Document |
Biotechnology for Biofuels | Archambault-Leger, V., Show, X., Lynd, L.R., Integrated analysis of hydrothermal flowthroughpretreatment, Biotechnology for Biofuels, 5:49, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-49 |
| 09/30/2011 | Argyros | High Ethanol Titers from Cellulose using Metabolically Engineered Thermophilic, Anaerobic Microbes View Document |
Applied Environmental Microbiology | Argyrosa, D.A., Tripathia, S.A., Barretta, T.F., Rogers, S.R., Feinberg, L.F., Olson, D.G., Fodena, J.M., Miller, B.B., Lynd, L.R., Hogsett, D.A., Caiazza, N.C., High Ethanol Titers from Cellulose using Metabolically Engineered Thermophilic, Anaerobic Microbes, Applied Environmental Microbiology, 77:8288-8294, 2011 | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.00646-11 |
| 11/21/2011 | Atmodjo | Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan–galacturonosyltransferase complex View Document |
PNAS | Atmodjo, M.A., Sakuragi, Y., Zhu, X., Burrell, A.J., Mohanty, S.S., Atwood III, J.A., Orlando, R., Scheller, H.V., Mohnen, D., Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan–galacturonosyltransferase complex, PNAS, 108(50):20225-30, 2011. | Research Area: Biomass Formation and Modification | 10.1073/pnas.1112816108/-/DCSupplemental. |
| 05/08/2013 | Atmodjo | Evolving views of pectin biosynthesis View Document |
Annual Review of Plant Biology | Atmodjo, M.A., Hao, Z., Mohnen, D., Evolving views of pectin biosynthesis, Annual Review of Plant Biology, 64:, 747-779, 2013. | Research Area: Biomass Formation and Modification | 10.1146/annurev-arplant-042811-105534 |
| 12/21/2010 | Atsumi | Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli View Document |
Molecular Systems Biology | Atsumi, S., Wu, T. Y., Machado, I. M. P., Huang, W. C., Chen, P. Y., Pellegrini, M., Liao, J. C., 2010, Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli, Molecular Systems, Volume 6, pp 11. | Research Area: Biomass Deconstruction and Conversion | 10.1038/msb.2010.98 |
| 03/01/2011 | Bar-Peled | Plant Nucleotide Sugar Formation, Interconversion, and Salvage by Sugar Recycling View Document |
Annual Review of Plant Biology | Bar-Peled, Maor, O'Neill, Malcolm A., Plant Nucleotide Sugar Formation, Interconversion, and Salvage by Sugar Recycling, Annual Review of Plant Biology, 62:127-55, 2011. | Research Area: Biomass Formation and Modification | 10.1146/annurev-arplant-042110-103918 |
| 05/11/2012 | Bar-Peled | The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II - Insights from Nucleotide Sugar Formation and Diversity View Document |
Frontiers in Plant Science | Bar-Peled, M., Urbanowicz, B.R., O'Neill, M.A., The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II - Insights from Nucleotide Sugar Formation and Diversity, 3:92, 2012. | Research Area: Biomass Formation and Modification | 10.3389/fpls.2012.00092 |
| 02/01/2013 | Bartley | Overexpression of a BAHD Acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification View Document |
Plant Physiology | Bartley, L.E., et. al., Overexpression of a BAHD Acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification, Plant Physiology, 161 (4), pp1615-1633, 2012. | Research Area: Characterization and Modeling | 10.1104/pp.112.208694 |
| 04/27/2012 | Basen | Engineering a Hyperthermophilic Archaeon for Temperature-Dependent Product Formation View Document |
mBio | Basen, M., Sun, J., Adams, M.W.W., Engineering a Hyperthermophilic Archaeon for Temperature-Dependent Product Formation, mBio, 3(2), 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/mBio.00053-12 |
| 12/01/2010 | Beckham | Application of computational science for understanding enzymatic deconstruction of cellulose View Document |
Current Opinion in Biotechnology | Beckham, Gregg T., Bomble, Yannick J., Bayer, Edward A., Himmel, Michael E., 2011, Applications of computational science for understanding enzymatic deconstruction of cellulose, Current Opinion in Biotechnology, Volume 22, pp 1-8. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.copbio.2010.11.005 |
| 05/15/2012 | Bennetzen | Reference genome sequence of the model plant Setaria View Document |
Nature Biotechnology | Bennetzen, J.L., et. al., Reference genome sequence of the model plant Setaria, Nature Biotechnology, 30,555–561, 2012. | Research Area: Biomass Formation and Modification | 10.1038/nbt.2196 |
| 10/01/2010 | Bergenstrahle | Simulation studies of the insolubility of cellulose View Document |
Carbohydrate Research | Bergenstrahle, M.,Wohlert, J., Himmel, M. E., Brady, J. W., Simulation studies of the insolubility of cellulose, Carbohydrate Research, Volume 345, Issue 14, pages 2060-2066, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.carres.2010.06.017 |
| 03/01/2013 | Bhandiwad | Metabolic engineering of thermoanaerobacterium thermosaccharolyticum for increased n-butanol production View Document |
Advances in Microbiology | Bhandiwad, A., Guseva, A., Lynd, L. R., Metabolic engineering of thermoanaerobacterium thermosaccharolyticum for increased n-butanol production, 3, 46-51, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.4236/aim.2013.31007 |
| 09/27/2011 | Biagioni | Orthogonal projection to latent structures solution properties for chemometrics and systems biology data View Document |
Journal of Chemometrics | Biagioni, D.J., Astling, D.P., Graf, P., Davis, M.F., Orthogonal projection to latent structures solution properties for chemometrics and systems biology data, Journal of Chemometrics, 25;9, 2011. | Research Area: Characterization and Modeling | 10.1002/cem.1398 |
| 05/25/2012 | Blumer-Schuette | Caldicellulosiruptor core and pan genomes reveal determinants for non-cellulosomal thermophilic deconstruction of plant biomass View Document |
Journal of Bacteriology | Blumer-Schuette, S.E., Giannone, R.J., Zurawski, J.V., Ozdemir, I., Ma, Q., Yin, Y., Xu, Y., Kataeva, I., Poole II, F.L., Adams, M.W.W., Hamilton-Brehm, S.D., Elkins, J.G., Larimer, F.W., Land, M.L., Hauser, L., Cottingham, R.W., Hettich, R.L., Kelly, R.M., Caldicellulosiruptor core and pan genomes reveal determinants for non-cellulosomal thermophilic deconstruction of plant biomass, Journal of Bacteriology, 194(15):4015-28, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.00266-12 |
| 01/01/2011 | Blumer-Schuette | Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjannonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor lactoaceticus View Document |
Journal of Bacteriology | Blumer-Schuette, S.E., Ozdemir, I., Mistry, D., Lucas, S., Lapidus, A., Cheng, J.F., Goodwin, L.A., Pitluck, S., Land, M.L., Hauser, L.J., Woyke, T., Mikhailova, N., Pati, A., Kyrpides, D., Ivanova, N., Detter, J.C., Walston-Davenport, K., Han, S., Adams, M.W.W., Kelly, R.M., Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus, Journal of Bacteriology, 193:6;1483-1484, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.01515-10 |
| 06/01/2008 | Blumer-Schuette | Extremely thermophilic microorganisms for biomass conversion: status and prospects View Document |
Current Opinion in Biotechnology | Blumer-Schuette, Sara E., Kataeva, Irina, Westpheling, Janet, Adams, Michael W.W., Kelly, Robert M., 2008, Extremely thermophilic microorganisms for biomass conversion; status and prospects, Current Opinion in Biotechnology, 19(3), 210-217, 2008. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.copbio.2008.04.007 |
| 10/22/2010 | Blumer-Schuette | Phylogenetic, microbiological and glycoside hydrolase diversity within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor View Document |
Applied Environmental Microbiology | Blumer-Schuette, S.E., Lewis, D.L., Kelly, R.M., Phylogenetic, microbiological and glycoside hydrolase diversity within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor, Applied Environmental Microbiology, 2010 Dec;76(24):8084-92 | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.01400-10 |
| 12/11/2009 | Bochner | Phenotype MicroArray Profiling of Zymomonas mobilis ZM4 View Document |
Applied Biochemistry and Biotechnology | Bochner, Barry, Gomez, Vanessa, Ziman, Michael, Yang, Shihui, Brown, Steven D., Phenotype MicroArray Profiling of Zymomonas mobilis AM4, Applied Biochemistry and Biotechnology, May 2010; pp 116-123 | Research Area: Biomass Deconstruction and Conversion | 10.1007/s12010-009-8842-2 |
| 06/01/2011 | Bomble | Modeling the Self-assembly of the Celluosome Enzyme Complex View Document |
The Journal of Biological Chemistry | Bomble, Y.J., Beckham, G.T., Matthews, J.F., Nimlos, M.R., Himmel, M.E., Crowley, M.F., Modeling the Selt-asembly of the Celluosome Enzyme Complex, The Journal of Biological Chemistry, volume 286(7), pp. 5614-5623, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1074/jbc.M110.186031 |
| 07/19/2010 | Bomble | Modeling the Cellulosome Using Multiscale Methods View Document |
ACS Symposium Series - Computational Modeling in Lignocellulosic Biofuel Production | Bomble, Yannick J., Crowley, Michael F., Xu, Q.I., Himmel, Michael E., Computational Modeling in Lignocellulosic Biofuel Production, Modeling the Cellulosome Using Multiscale Models, chapter 4, pp 75-98 | Research Area: Biomass Deconstruction and Conversion | 10.1021/bk-2010-1052.ch004 |
| 06/12/2008 | Bordner | Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces View Document |
BMC Bioinformatics | Bordner, Andrew J., Gorin, AndreyA., Comprehensive inventory of protein complexes in the Protein Data Band from consistent classification of interfaces, BMC Bioinformatics, 2008, 9:234. | Research Area: Characterization and Modeling | 10.1186/1471-2105-9-234 |
| 07/01/2012 | Brosse | Miscanthus: a fast-growing crop for biofuels and chemicals production View Document |
Biofuels, Biproducts & Biorefining | Brosse, N., Dufour, A., Meng, X., Sun, Q., Ragauskas, A., Miscanthus: a fast-growning crop for biofuels and chemicals production, Biofuels, Bioproducts & Biorefining, Volume 6, Issue 5, pages 580–598, 2012. | Research Area: Characterization and Modeling | 10.1002/bbb.1353 |
| 05/25/2012 | Brown | Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2 View Document |
Journal of Bacteriology | Brown, S.D., Lamed, R., Morag, E., Borovok, I., Shoham, Y., Klingeman, D.M., Johnson, C.M., Yang, Z., Land, M.L., Utturkar, S.M., Keller, M., Bayer, E.A., Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2, Journal of Bacteriology, 194 (12) pp 3290-3291, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.00473-12 |
| 07/14/2011 | Brown | Complete Genome Sequence of the Haloalkaliphilic, Hydrogen Producing Halanaerobium hydrogenoformans View Document |
Journal of Bacteriology | Brown, S.D., Begemann, M.B., Mormile, M.R., Wall, J.D., Han, C.S., Goodwin, L.A., Pitluck, S., Land, M.L., Hauser, L.J., Elias, D.A., Complete Genome Sequence of the Haloalkaliphilic, Hydrogen Producing Halanaerobium hydrogenoformans, Journal of Bacteriology, Volume 193, No. 4, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.05209-11 |
| 08/16/2011 | Brown | Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum View Document |
PNAS | Brown, S.D., Shao, X., Guss, A.M., Bhandiwad, A., Karpinets, T.V., Parks, J.M., Smolin, N., Yang, S., Land, M.L., Klingemen, D.M., Rodriguez Jr., M., Raman, B., Zhu, M., Mielenz, J.R., Smith, J.C., Tschaplinski, T.J., Engle, N.L., Giannone, R.J., Hettich, R.L., Keller, M., Lynd, L.R., Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum, PNAS, 108(33):13752-13757, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1073/pnas.1102444108 |
| 08/01/2012 | Brunecky | Analysis of Transgenic Glycoside Hydrolases Expressed in Plants: T. reesei CBH I and A. celluloyticus EI | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Brunecky, R., Baker, J.O., Wei, H., Taylor, L.E., Himmel, M.E., Decker, S.R., Analysis of Transgenic Glycoside Hydrolases Expressed in Plants: T. reesei CBH I and A. celluloyticus EI, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:197-211, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_18 |
| 03/01/2012 | Brunecky | Structure and function of the Clostridium thermocellum cellobiohydrolase A X1-module repeat: enhancement through stabilization of the CbhA complex View Document |
Acta Crystallographica - Section D | Brunecky, R., M. Alahuhta, et al. (2012). "Structure and function of the Clostridium thermocellum cellobiohydrolase A X1-module repeat: enhancement through stabilization of the CbhA complex." Acta Crystallographica Section D 68(3): 292-299. | Research Area: Biomass Deconstruction and Conversion | 10.1107/S0907444912001680 |
| 01/01/2009 | Burris | An improved tissue culture system for embyrogenic callus production and plant regeneration in switchgrass (Panicum virgatum L.) BER-130R1 View Document |
Bioenergy Research | Burris, Jason N., Mann, David G.J., Joyce, Blake, Stewart, C. Neal, 2009, BioEnergy Research, An improved tissue culture system for embyrogenic callus production and plant regeneration in switchgrass, Volume 2, Number 4, December 2009. | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9048-8 |
| 09/11/2009 | Caffall | Arabidopsis thaliana T-DNA Mutants Implicate GAUT Genes in the Biosynthe sis of Pectin and Xylan in Cell Walls and Seed Testa View Document |
Molecular Plant | Caffall, Kerry H., Pattathil, Sivakumar, Phillips, Sarah E., Hahn, Michael G., Mohnen, Debra, Arabidopsis thaliana T-DNA Mutants Implicate GAUT Genes in the Biosynthe sis of Pectin and Xylan in Cell Walls and Seed Testa, Molecular Plant, Volume 2, Number 5, pp 1000 - 1014 | Research Area: Biomass Formation and Modification | 10.1093/mp/ssp062 |
| 09/28/2009 | Caffall | The structure, function, and biosynthesis of plant cell wall pectic polysaccharides View Document |
Carbohydrate Research | Caffall KH, Mohnen D., The structure, function, and biosynthesis of plant cell wall pectic polysaccharides., Carbohydrate Research 2009;344(14):1879-1900. | Research Area: Biomass Formation and Modification | 10.1016/j.carres.2009.05.021 |
| 03/18/2011 | Cai | MicroSyn: A user friendly tool for detection of microsynteny in a gene family View Document |
BMC Bioinformatics | Cai, Bin, Yang, Xiaohan, Yang, Tuskan, Gerald A., Cheng, Zong-Ming, MicroSyn: A user friendly tool for detection of microsynteny in a gene family, BMC Bioinformatics, 12:79, 2011. | Research Area: Biomass Formation and Modification | 10.1186/1471-2105-12-79 |
| 09/01/2012 | Cao | Chemical transformations of Populus trichocarpa during dilute acid pretreatment View Document |
RCS Advances | Cao, S., Pu, Y., Studer, M., Wyman, C., Ragauskas, A., Chemical transformations of Populus trichocarpa during dilute acid pretreatment, RCS Advances, 2, 10925-10936, 2012. | Research Area: Characterization and Modeling | 10.1039/C2RA22045H |
| 02/16/2011 | Cartmell | The structure and function of an arabinan-specific a-1,2-
arabinofuranosidase identified from screening the activities of bacterial
GH43 glycoside hydrolases View Document |
Journal of Biological Chemistry | Cartmell, A., McKee, Lauren S., Pena, Maria J., Larsbring, Johan, Brumer, Harry, Kaneko, Satoshi, Ichinose, Hitomi, Lewis, Richard J., Vikso-Nielson, Anders, Gilbert, Harry J., Marles-Wright, Jon, The Structure and Function of an Arabinan-specific α-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases , The Journal of Biological Chemistry, 2011 286: 15483-15495. | Research Area: Biomass Formation and Modification | 10.1074/jbc.M110.215962 |
| 11/01/2011 | Casler | The Switchgrass Genome: Tools and Strategies View Document |
The Plant Genome | Casler, M.D., Tobias, C.M., Kaeppler, S.M., Buell, C.R., Wang, Z.Y., Cao, P., Schmutz, J., Ronald, Pa., The Switchgrass Genome: Tools and Strategies, The Plant Genome. 4(3): 273-282, 2011. | Research Area: Biomass Formation and Modification | 10.3835/plantgenome2011.10.0026 |
| 12/08/2011 | Chen | Molecular dynamics simulations of the interaction of glucose with imidazole in aqueous solution View Document |
Carbohydrate Research | Chen, M., Y. J. Bomble,t al. (2012). "Molecular dynamics simulations of the interaction of glucose with imidazole in aqueous solution." Carbohydrate Research 349:73–77. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.carres.2011.12.008 |
| 01/17/2012 | Chen | A polymer of caffeyl alcohol in plant seeds View Document |
PNAS | Chen, F., Y. Tobimatsu, et al. (2012). "A polymer of caffeyl alcohol in plant seeds." Proceedings of the National Academy of Sciences 109 (5): 1772-1777. | Research Area: Biomass Formation and Modification | 10.1073/pnas.1120992109 |
| 08/01/2012 | Chen | Lignin-Degrading Enzyme Activities | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Chen, Y.R., Sarkanen, S., Wang, Y.Y., Lignin-Degrading Enzyme Activities, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:251-268, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_21 |
| 09/07/2012 | Chen | Novel seed coat lignins in the Cactaceae: structure, distribution and implications for the evolution of lignin diversity View Document |
The Plant Journal | Chen, F., Tobimatsu, Y., Jackson, L., Ralph, J., Dixon, R.A., Novel seed coat lignins in the Cactaceae: structure, districution and implications for the evolution of lignin diversity, The Plant Journal, 2012. | Research Area: Biomass Formation and Modification | 10.1111/tpj.12012 |
| 03/01/2010 | Chen | Macromolecular replication during lignin biosynthesis View Document |
Phytochemistry | Chen, Y., Sarkanen, S., Macromolecular replication during lignin biosynthesis, Phytochemistry, Volume 71, Issue 4, March 2010, Pages 453-462 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.phytochem.2009.11.012 |
| 01/01/2011 | Chen | The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom View Document |
The Plant Journal | Chen, F., Tholl, D., Bohlmann, J., Pichersky, E., The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom, The Plant Journal, 66, 212-229, 2011. | Research Area: Biomass Formation and Modification | 10.1111/j.1365-313X.2011.04520.x |
| 05/01/2010 | Chen | A High - Throughput Transient Gene Expression System for Switchgrass (Panicum virgatum L.) Seedlings View Document |
Biotechnology for Biofuels | A High - Throughput Transient Gene Expression System for Switchgrass (Panicum virgatum L.) Seedlings, Biotechnology for Biofuels, 7;3:9, 2010 | Research Area: Biomass Formation and Modification | 10.1186/1754-6834-3-9 |
| 01/01/2011 | Chen | Genome-wide discovery of missing genes in biological pathways of prokaryotes View Document |
BMC Bioinformatics | Chen, Y., Mao, F., Li, G., Xu, Y., Genome-wide discovery of missing genes in biological pathways of prokaryotes, BMC Bioinformatics, 12 (suppl 1):S1, 2011. | Research Area: Characterization and Modeling | 10.1186/1471-2105-12-S1-S1 |
| 09/01/2009 | Chen | Genomics of Secondary Metabolism in Populus: Interactions with Biotic and Abiotic Environments View Document |
Critical Reviews in Plant Sciences | Chen, F., Liu, C.J., Tschaplinski, T.J., Zhao, N.,Genomics of Secondary Metabolism in Populus: Interactions with Biotic and Abiotic Environments, Critical Reviews in Plant Sciences, 28:375-392, 2009. | Research Area: Biomass Formation and Modification | 10.1080/07352680903241279 |
| 09/05/2009 | Cheng | Populus community mega-genomics: coming of age View Document |
Critical Reviews in Plant Sciences | Zong-Ming Cheng and Gerald A. Tuskan. 2009 Populus community mega-genomics: coming of age. Critical Reviews in Plant Sciences. 28(5):282-284. | Research Area: Biomass Formation and Modification | 10.1080/07352680903240933 |
| 08/23/2010 | Chou | GolgiP: prediction of Golgi resident proteins in plants View Document |
Bioinformatics | Chou, W.C., Yin, Y., Xu, Y., GolgiP: prediction of Golgi resident proteins in plants, Bioinformatics, Volume 26, Issue 19, pages 2464-2465 | Research Area: Characterization and Modeling | 10.1093/bioinformatics/btq446 |
| 06/01/2009 | Chou | Recent developments in parameter estimation and structure identification of biochemical and genomic systems View Document |
Mathematical Biosciences | Chou, I. C., Voit, E. O., Recent Developments in parameter estimation and structure identification of biochemical and genomic systems, Mathematical Biosciences, Volume 219, Issue 2, pp 57-83, 2009 | Research Area: Characterization and Modeling | 10.1016/j.mbs.2009.03.002 |
| 08/09/2012 | Chou | Estimation of dynamic flux profiles from metabolic time series data View Document |
BMC Systems Biology | Chou, I.C., Voit, E.O., Estimation of dynamic flux profiles from metabolic time series data, BMC Systems Biology, 6:84, 2012. | Research Area: Characterization and Modeling | 10.1186/1752-0509-6-84 |
| 02/04/2011 | Chundawat | Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals View Document |
The Annual Review of Chemical and Biomolecular Engineering | Chundawat, Shishir P.S., Beckham, Gregg T., Himmel, Michael E., Dale, Bruce E., Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals, The Annual Review of Chemical and Biomolecular Engineering, 2: 121-145, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1146/annurev-chembioeng-061010-114205 |
| 05/22/2011 | Chung | Identification and characterization of CbeI, a novel thermostable restriction enzyme from Caldicellulosiruptor bescii DSM 6725 and a member of a new subfamily of HaeIII-like enzymes View Document |
Journal of Industrial Microbiology and Biotechnology | Chung, D.H., Huddleston, J.R., Farkas, J., Westpheling, J., Identification and characterization of CbeI, a novel thermostable restriction enzyme from Caldicellulosiruptor bescii DSM 6725 and a member of a new subfamily of HaeIII-like enzymes, Journal of Industrial Microbiology and Biotechnology, 38(11): 1867-1877, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s10295-011-0976-x |
| 08/22/2012 | Chung | Methylation by a Unique alpha-class N4-Cytosine Methyltransferase Is Required for DNA Transformation of
Caldicellulosiruptor bescii DSM6725 View Document |
PLoS One | Chung, D., Farkas, J., Huddleston, J., Olivar, E., Westpheling, J., Methylation by a unique α-class N4-Cytosine Methyltransferase is Required for DNA Transformation of Caldicellulosiruptor bescii DSM6725, PLoS One, 7(8): e43844, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1371/journal.pone.0043844 |
| 04/03/2013 | Chung | Construction of a stable replicating shuttle vector for Caldicellulosiruptor species: use for extending genetic methodologies to other members of this genus View Document |
PLoS ONE | Chung, D., Cha, M., Farkas, J., Westpheling, J., Construction of a stable replicating shuttle vector for Caldicellulosiruptor species: use for extending genetic methodologies to other members of this genus, PLoS ONE, 8(5): e62881, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.1371/journal.pone.0062881 |
| 11/01/2008 | Cole | Possible impacts of the US EPA Notice of Proposed Rulemaking on the biofuels industry View Document |
Industrial Biotechnology | Possible impacts of the US EPA Notice of Proposed Rulemaking on the biofuels industry, Industrial Biotechnology, Volume 4, No:4; pages 322-333, 2008. | Research Area: Characterization and Modeling | 10.1089/ind.2008.4.322 |
| 08/01/2012 | Corea | Laser Microdissection and Genetic Manipulation Technologies to Probe Lignin Heterogeneity and Configuration in Plant Cell Walls | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Corea, O.R.A., Ki, C., Cardenas, C.L., Davin, L.B., Lewis, N.G., Laser Microdissection and Genetic Manipulation Technologies to Probe Lignin Heterogeneity and Configuration in Plant Cell Walls, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:229-250, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_20 |
| 05/20/2011 | Correia | The structure and function of an arabinoxylan-specific xylanase View Document |
Journal of Biological Chemistry | Correia, Marcia A., Mazumder, K., Bras, J.L., Firbank, S.J., Zhu, Y., Lewis, R.J., York, W.S., Fontes, C.M., Gilbert, H.J., The structure and function of an arabinoxylan-specific xylanase, Journal of Biological Chemistry, 286: 22510-22520, 2011. | Research Area: Biomass Formation and Modification | 10.1074/jbc.M110.217315 jbc.M110.217315 |
| 05/14/2012 | Cui | Enzymatic Digestibility of Corn Stover Fractions in Response to Fungal Pretreatment View Document |
Industrial and Engineering Chemistry Research | Cui, Z., Wan, C., Shi, J., Sykes, R.W., Li, Y., Enzymatic Digestibility of Corn Stover Fractions in Response to Fungal Pretreatment, Industrial and Engineering Chemistry Research, 51 (21), pp 7153–7159, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1021/ie300487z |
| 02/01/2013 | Currie | Functional heterologous expression of an engineered full length CipA from Clostridium thermocellum in Thermoanaerobacterium saccharolytim View Document |
Biotechnology for Biofuels | Currie, D.H., Herring, C.D., Guss, A.M., Olson, D.G., Hogsett, D.A., Lynd, L.R., Functional heterologous expression of an engineered full length CipA from Clostridium thermocellum in Thermoanaerobacterium saccharolytim, Biotechnology for Biofuels, 6:32, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-6-32 |
| 10/29/2012 | Czarnecki | Evidence for a contribution of ALA synthesis to plastid-to-nucleus signaling View Document |
Frontiers in Plant Science | Czamecki, O., Glaber, C., Chen, J.G., Mayer, K.F.X., Grimm, Evidence for a contribution of ALA synthesis to plastid-to-nucleus signaling, Frontiers in Plant Science, 3:236, 2012. | Research Area: Biomass Formation and Modification | 10.3389/fpls.2012.00236 |
| 12/04/2010 | Dagel | In Situ Imaging of Single Carbohydrate-Binding Modules on Cellulose Microfibrils View Document |
Journal of Physical Chemistry B | Dagel, D. J., Liu, Y. S., Zhong, L. L., Luo, Y. H., Himmel, M. E., Xu, Q., Zeng, Y. N., Ding, S. Y., Smith, S., In Situ Imaging of Single Carbohydrate-Binding Modules on Cellulose Microfibrils, Journal of Physical Chemistry B, Volume 115, Issue 4, 635-641, 2011. | Research Area: Characterization and Modeling | 10.1021/jp109798p |
| 08/01/2011 | Dagel | DOPI and PALM Imaging of Single Carbohydrate Binding Modules
Bound to Cellulose Nanocrystals View Document |
SPIE Proc. Proc | Dagel, D.J., Liu, Y.S., Zong, L., Luo, Y., Zeng, Y., Himmel, M., Ding, S.Y., Smith, S., DOPI and PALM Imaging of Single Carbohydrate Binding Modules Bound to Cellulose Nanocrystals, SPIE 7905, 79050P, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1117/12.875285 |
| 01/20/2011 | Dam | Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725 View Document |
Nucleic Acids Research Advance | Dam, Phuongan, Kataeva, Irina, Yang, Sung-Jae, Zhou, Fengfeng, Yin, Chou, Wenchi, Poole II, Farris L., Westpheling, Janet , Hettich, Robert, Giannone, Richard Giannone, Lewis, Derrick L., Kelly, Robert, Gilbert, Harry J., Henrissat, Bernard, Xu, Ying, Adams, Michael W. W, Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725, Nucleic Acids Research, 2011, 1-15. | Research Area: Biomass Deconstruction and Conversion | 10.1093/nar/gkq1281 |
| 04/01/2010 | Darvill | Plant Cell Walls | Plant Cell Walls | Albersheim, P., Darvill, A., Roberts, K., Sederoff, R., Staehelin, A., Plant Cell Walls,, Plant Cell Walls, 2010. | Research Area: Biomass Formation and Modification | ISBN: 978-0-8153-1996-2 |
| 07/01/2010 | David | Switchgrass as an energy crop for biofuel production: A review of its ligno-cellulosic chemical properties View Document |
Energy and Environmental Science | Kasi, David, Ragauskas, A.J., Switchgrass as an energy crop for biofuel production: A review of its ligno-cellulosic chemical properties, Energy and Environmental Science, Volume 3, Issue 9, pp 1182-1190, 2010. | Research Area: Characterization and Modeling | 10.1039/b926617h |
| 12/01/2009 | Davison | The goals and research of the BioEnergy Sciences Center (BESC): Developing cost-effective and sustainable means of producing biofuels by overcoming biomass recalcitrance View Document |
Bioenergy Research | Davison, Brian H., Fowler, V. Suzy, The goals and research of the BioEnergy Sciences Center (BESC): Developing cost-effective and sustainable means of producing biofuels by overcoming biomass recalcitrance, Bioenergy Research, Volume 2, Number 4 / December, 2009. | Research Area: Characterization and Modeling | 10.1007/s12155-009-9057-7 |
| 09/01/2011 | Davison | Plant Cell Walls: Basics of Structure, Chemistry, Accessibility and the Influence on Conversion View Document |
Aqueous Pretreatment of Plant Biomass for Biological and | Davison, B.H., Parks, J., Davis, M.F., Donohoe, B.,Sannigrahi, P., Ragauskas, A.J., Fundamentals of biomass pretreatment by fractionation, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 3, pp 23-36, 2013. | Research Area: Characterization and Modeling | |
| 07/31/2012 | Davison | The Increasing Importance and Capabilities of Biomass Characterization View Document |
Industrial Biotechnology | Davison, Brian H., The Increasing Importance and Capabilities of Biomass Characterization, Industrial Biotechnology, 8:4, 2012. | Research Area: Characterization and Modeling | 10.1089/ind.2012.1527 |
| 11/06/2012 | De Souza | Composition and Structure of Sugarcane cell wall polysaccharides: implications for second-generation bioethanol production View Document |
Bioenergy Research | de Souza, A.P., Leite, D.C.C., Pattathil, S., Hahn, M.G., Buckeridge, M.S., Composition and structure of sugarcane cell wall polysaccharides: implications for second-generation bioethanol production, BioEnergy Research, 2012 | Research Area: Biomass Formation and Modification | 10.1007/s12155-012-9268-1 |
| 08/01/2012 | Decker | Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Decker, S.R., Carlile, M., Selig, M.J., Doeppke, C., Davis, M., Sykes, R., Turner, G., Ziebell, A., Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;181-198, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_17 |
| 12/01/2009 | Decker | High-Throughput Screening Techniques for Biomass Conversion View Document |
Bioenergy Research | Decker, Stephen R., Brunecky, Roman, Tucker, Melvin, P., Himmel, Michael E., Selig, Michael J., High-throughput screening techniques for biomass conversion, Bioenergy Research, Volume 2, Number 4 / December, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s12155-009-9051-0 |
| 09/06/2011 | DeMartini | Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production View Document |
Energy and Environmental Science | DeMartini, J.D., Pattathil, S., Uvci, U., Szekalski, K., Mazumder, K., Hahn, M.G., Wyman, C.E., Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production, Energy and Environmental Science, 4, 4332-4339, 2011. | Research Area: Characterization and Modeling | 10.1039/C1EE02112E |
| 10/01/2010 | DeMartini | Changes in composition and sugar release across the annual rings of Populus wood and implications on recalcitrance View Document |
Bioresource Technology | DeMartini, J. D., Wyman, C. E., Changes in composition and sugar release across the annual rings of Populus wood and implications on recalcitrance, Bioresource Technology, Volume 12, Issue 2, pp 1352-1358, 2011. | Research Area: Characterization and Modeling | 10.1016/j.biortech.2010.08.123 |
| 09/01/2010 | DeMartini | Small scale and automatable high-throughput compositional analysis of biomass View Document |
Biotechnology and Bioengineering | DeMartini, J. D., Studer, M. H., Wyman, C. E., Small-Scale and Automatable High-Throughput Compsitional Analysis of Biomass, Biotechnology and Bioengineering, Volume 108, Issue 2, pp 306-312, 2011. | Research Area: Characterization and Modeling | 10.1002/bit.22937 |
| 11/15/2011 | DeMartini | Composition and hydrothermal pretreatment and enzymatic saccharification performance of grasses and legumes from a mixed species prarie View Document |
Biotechnology for Biofuels | DeMartini, J.D., Wyman, C. E., Composition and hydrothermal pretreatment and enzymatic saccharification performance of grasses and legumes from a mixed species prairie, Biotechnology for Biofuels, 4:52, 2011 | Research Area: Characterization and Modeling | 10.1186/1754-6834-4-52 |
| 01/08/2013 | DeMartini | Investigating plant cell wall components that affect biomass recalcitrance in poplar
and switchgrass View Document |
Energy & Environmental Science | DeMartini, J.D., Pattathil, S., Miller, J.S., Li, H., Hahn, M.G., Wyman, C.E., Investigating plant cell wall components that affect biomass recalcitrance in poplar and switchgrass, 6, 898-909,2012. | Research Area: Characterization and Modeling | 10.1039/C3EE23801F |
| DeMartini | High-throughput pretreatment and hydrolysis systems for screening biomass species in aqueous pretreatment of plant biomass | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Demartini, J., Wyman, C.E., High-throughput pretreatment and hydrolysis systems for screening biomass species in aqueous pretreatment of plant biomass, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 22, pp 471-486, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch22 | |
| 12/01/2012 | Deng | Redirecting carbon flux through exogenous pyruvate kinase to achieve high ethanol yields in Clostridium thermocellum | Metabolic Engineering | Deng, Y., Olson, D.G., Zhou, J., Herring, C.D., Shaw, A., Lynd, L.R., Redirecting carbon Flux through exogenous pyruvate kinase to achive high ethanol yields in Clostridium thermocellum, Metabolic Engineering, 2012 | Research Area: Biomass Deconstruction and Conversion | |
| 05/01/2011 | Deshpande | Plant Genetics for Study of the Roles of Root Exudates and Microbes in the Soil View Document |
Root Genomics | Deshpande, A., Pontaroli, A.C., Chaluvadi, S.R., Lu, F., Bennetzen, J.L., Plant Genetics for Study of the Roles of Root Exudates and Microbes in the Soil, Root Genomics, Chapter 4, p. 99-111, 2011. | Research Area: Biomass Formation and Modification | 10.1007/978-3-540-85546-0_4 |
| 01/01/2009 | Desikan | Nanomechanical Methods to Study Single Cells View Document |
Accessing Uncultivated Microorganisms | Desikan, Ramya, Laurene Tetard, Ali Passian, Ram Datar, and Thomas Thundat , Nanomechanical Methods to Study Single Cells, Accessing Uncultivated Microorganisms, book ed. By Karsten Zengler, ASM Press, 2009. | Research Area: Characterization and Modeling | ISBM 1555814069 |
| 05/01/2011 | DiFazio | Populus: A premier pioneer system for plant genomics View Document |
Genetics, Genomics and Breeding of Crop Plants | DiFazio S.P., G.T. Slavov, and C.S. Joshi, Populus: A premier pioneer system for plant genomics, In Joshi, C.P., and S.P. DiFazio (eds). Poplar. Science Publishers, Enfield, New Hampshire, chapter 1, pp 1-28, 2011. | Research Area: Biomass Formation and Modification | 10.1201/b10819-2 |
| 09/30/2010 | DiFazio | The Populus Genome Project View Document |
Principles and Practices of Plant Genomics Volume 3 | In Kole, C., and A. Albert (eds). Vol. 3: Advanced Genomics. Science Publishers, Enfield, New Hampshire (accepted) | Research Area: Biomass Formation and Modification | ISBN: 978-1-57808-683-2 |
| 06/01/2008 | Ding | A Biophysical Perspective of the Cellulosome: New Opportunities for Biomass Conversion View Document |
Current Opinion in Biotechnology | Ding, Shi-You, Qi Xu, Michael Crowley, Yining Zeng, Mark Nimlos, Raphael Lamed, Edward A. Bayer, and Michael E. Himmel , A Biophysical Perspective of the Cellulosome: New Opportunities for Biomass Conversion , Current Opinion Biotechnology, 19(3), 218-227, 2008 | Research Area: Characterization and Modeling | 10.1016/j.copbio.2008.04.008; 2008 |
| 01/01/2008 | Ding | Identify Molecular Structural Features of Biomass Recalcitrance Using Nondestructive Microscopy and Spectroscopy View Document |
Microcopy and Microanalysis | Ding, S.Y., Himmel, M., Xie, X.S., Identify Molecular Structural Features of Biomass Recalcitrance Using Nondestructive Microscopy and Spectroscopy, Microcopy and Microanalysis, 14:1494-1495, 2008. | Research Area: Characterization and Modeling | 10.1017/S1431927608088582 |
| 08/01/2012 | Ding | Imaging Cellulose Using Atomic Force Microscopy | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Ding, S.Y., Liu, Y.S., Imaging Cellulose Using Atomic Force Microscopy, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:23-30, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_3 |
| 11/23/2012 | Ding | How Does Plant Cell Wall Nanoscale Architecture Correlate With Enzymatic Digestibility? View Document |
Science | Ding, S.Y., Liu, Y.S., Zeng, Y., Himmel, M.E., Baker, J.O., Bayer, E.A., How Does Plant Cell Wall Nanoscale Architecture Correlate With Enzymatic Digestibility?, Science, 338 (6110), 1055-1060, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1126/science.1227491 |
| 12/01/2009 | Dixon | DOE Bioenergy Center Special Issue. The Bioenergy Sciences Center (BESC) View Document |
BioEnergy Research | Dixon, Richard, DOE BioEnergy Center Special Issue, The BioEnergy Sciences Center (BESC), Bioenergy Research, Volume 2, Number 4 / December, 2009 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9059-5 |
| 06/01/2009 | Drost | A Microarray-Based Genotyping and Genetic Mapping Approach for Highly Heterozygous Outcrossing Species Localizes a Large Fraction of the Unassembled Populus trichocarpa Genome Sequence View Document |
Plant Journal | Drost, D., Novaes, E., Boaventura-Novaes, C., Benedict, C., Brown, R., Yin, T., Tuskan, G., A Microarray-Based Genotyping and Genetic Mapping Approach for Highly Heterozygous Outcrossing Species Localizes a large fraction of the unassembles populus trichocarpa, genome sequence, Plant Journal, March 2009; 58, 1054-1067. | Research Area: Biomass Formation and Modification | 10.111/j.1365-313X.2009.038258.x |
| 05/09/2012 | Duceppe | Assessment of Genetic Variability of Cell Wall Degradability for the Selection of Alfalfa with Improved Saccharification Efficiency View Document |
BioEnergy Research | Duceppe, M.O., Bertrand, A., Pattathil, S., Miller, J., Castonguay, Y., Hahn, M.G., Michaud, R., Dube, M.P., Assessment of Genetic Variability of Cell Wall Degradability for the Selection of Alfalfa with Improved Saccharification Efficiency, BioEnergy Research, 2012 | Research Area: Biomass Formation and Modification | 10.1007/s12155-012-9204-4 |
| 04/11/2013 | Elkins | Complete genome sequence of the hyperthermophilic sulfate-reducing bacterium thermodesulfobacterium geofontis OPF15 View Document |
Genome Announcements | Elkins, J.G., Hamilton-Brehm, S.D., Lucas, S., Han, J., Lapidus, A., Cheng, J.F., Goodwin, L.A., Pitluck, S., Peters, L., Mikhailova, N., Davenport, K.W., Detter, J.C., Han, C.S., Tapia, R., Land, M.L., Hauser, L., Kyrpides, N.C., Ivanova, N.N., Pagani, I., Bruce, D., Woyke, T., Cottingham, R.W., Complete genome sequence of the hyperthermophilic sulfate-reducing bacterium thermodesulfobacterium geofontis OPF15, Genome Announcements, 1(2); e00162-13, 2013. | Research Area: Characterization and Modeling | 10.1128/genomeA.00162-13 |
| 10/01/2010 | Elkins | Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T View Document |
Journal of Bacteriology | Elkins, J.G., Lochner, A., Hamilton-Brehm, S.D., Davenport, K.W., Podar, M., Brown, S.D., Land, M.L., Hauser, L.J., Klingeman, D.M., Raman, B., Goodwin, L.A., Tapia, R., Meincke, L.J., Detter, J.C., Bruce, D.C., Han, C.S., Palumbo, A.V., Cottingham, R.W., Keller, M., Graham, D.E., Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47, Journal of Bacteriology, 192:22, pp 6099-6100, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.00950-10 |
| 06/01/2010 | Elkins | Engineered microbial systems for enhanced conversion of lignocellulosic biomass View Document |
Current Opinion in Biotechnology | Elkins, J. G., Raman, B., Keller, M., Engineered microbial systems for enhanced conversion of lignocellulosic biomass, Current Opinion in Biotechnology, Volume 21, Issue 5, pp 657-662, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.copbio.2010.05.008 |
| 10/01/2011 | Ellis | Closing the Carbon Balance for Fermentation by Clostridium thermocellum
(ATCC 27405) View Document |
Bioresource Technology | Ellis, L.D., Holwerda, E.K., Hogsett, D., Rogers, S., Shao, X., Tschaplinski, T., Thorne, P., Lynd, L.R., Closing the Carbon Balance for Fermentation by Clostridium thermocellum (ATCC 27405), Bioresource Technology, 103(1):293-299, 2011 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2011.09.128 |
| 10/14/2011 | Escamilla-Treviño | Potential of Plants from the Genus Agave as Bioenergy Crops View Document |
BioEnergy Research | Escamilla-Trevino, L.. (2011) "Potential of Plants from the Genus Agave as Bioenergy Crops." Bioenergy Research. (published online doi:10.1007/s12155-011-9159-x) | Research Area: Biomass Formation and Modification | 10.1007/s12155-011-9159-x |
| 01/01/2010 | Escamilla-Treviño | Switchgrass (Panicum virgatum L.) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties View Document |
New Phytologist | Escamilla-Treviño Luis L., Hui Shen, Srinivasa Rao Uppalapati, Tui Ray, Yuhong Tang, Timothy Hernandez, Yanbin Yin, Ying Xu, and Richard A. Dixon, Switchgrass (Panicum virgatum L.) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties, New Phytologist, Volume 185 Issue 1, Pages 143 - 155, 2009. | Research Area: Biomass Formation and Modification | 10.1111/j.1469-8137.2009.03018 |
| 07/22/2011 | Farkas | Defining Components of the Chromosomal Origin of Replication of the Hyperthermophilic Archaeon, Pyrococcus furiosus, needed for construction of a stable replicating shuttle vector View Document |
Applied Environmental Microbiology | Farkas, J., Chung D., DeBarry, M., Adams, Michael W.W., Westpheling, J., Defining Components of the Chromosomal Origin of Replication of the Hyperthermophilic Archaeon, Pyrococcus furiosus, needed for construction of a stable replicating shuttle vector, Applied Environmental Microbiology, 77;18, pp 6343-6349, July 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.05057-11 |
| 04/01/2012 | Farkas | The Recombinogenic Properties of the Pyrococcus furiosus COM1 Strain Enable Rapid Selection of Targeted Mutants View Document |
Applied Environmental Microbiology | Farkas, J., Stirrett, K., Lipscomb, G.L., Nixon, W., Scott, R.A., Adams, M.W.W., Westpheling, J., The Recombinogenic Properties of the Pyrococcus furiosus COM1 Strain Enable Rapid Selection of Targeted Mutants, Applied Environmental Microbiology, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.00936-12 |
| 09/19/2012 | Farkas | Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii View Document |
Journal of Industrial Microbiology and Biotechnology | Farkas, J., Chung, D., Cha, M., Copeland, J., Grayeski, P., Westpheling, J., Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii, Journal of Industrial Microbiology and Biotechnology, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1007/s10295-012-1202-1 |
| 04/24/2013 | Flowers | SMET: Systematic multiple enzyme targeting - a method to rationally design optimal strains for target chemical overproduction | Biotechnology Journal | Flowers, D., Thompson R.A., Bridwell, D., Wang, T., Trihn, C.T., SMET: Systematic multiple enzyme targeting - a method to rationally design optimal strains for target chemical overproduction, Biotechnology Journal, 2013 | Research Area: Characterization and Modeling | |
| 09/14/2012 | Foston | NMR a critical tool to study the production of carbon fiber from carbon View Document |
Carbon | NMR a critical tool to study the production of carbon fiber from lignin, Carbon, 52 p 65-73, 2012. | Research Area: Characterization and Modeling | 10.1016/j.carbon.2012.09.006 |
| 05/29/2012 | Foston | C cell wall enrichment and ionic liquid NMR analysis: progress towards a high-throughput detailed chemical analysis of the whole plant cell wall View Document |
Analyst | Foston, M., Samuel, S., Ragauskas, A.J., C cell wall enrichment and ionic liquid NMR analysis: progress towards a high-throughput detailed chemical analysis of the whole plant cell wall, Analyst, 2012. | Research Area: Characterization and Modeling | 10.1039/c2an35344j |
| 08/16/2012 | Foston | Biomass Characterization: Recent Progress in Understanding Biomass Recalcitrance View Document |
Industrial Biotechnology | Foston, M., Ragauskas, A.J., Biomass Characterization: Recent Progress in Understanding Biomass Recalcitrance, 8(4); 191-208, 2012. | Research Area: Characterization and Modeling | 10.1089/ind.2012.0015 |
| 10/20/2011 | Foston | Chemical, ultrastructural and supermolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance View Document |
Energy and Environmental Science | Foston, M., Hubbell, C.A., Samuel, R., Jung, S., Fan, H., Ding, S.Y., Zeng, Y., Jawdy, S., Davis, M., Sykes, R., Gjersing, E., Tuskan, G.A., Kalluri, U., Ragauskas, A.J., Chemical, ultrastructural and supra molecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance, Energy and Environmental Science, 4: 4962-4971, 2011 | Research Area: Characterization and Modeling | 10.1039/c1ee02073k |
| 12/01/2009 | Foston | Variations in Cellulosic Ultrastructure of Poplar BER-123R1 View Document |
BioEnergy Research | Foston, M., Hubbell, C. A., Davis, M., Ragauskas, A. J., Variations in Cellulosic Ultrastructure of Poplar, Bioenergy Research, Volume 2, Number 4, pp 193-197, December,2;4, pp 193-197, 2009. | Research Area: Characterization and Modeling | 10.1007/s12155-009-9050-1 |
| 02/01/2012 | Foston | Solid-State Selective 13C Excitation and Spin Diffusion NMR To Resolve Spatial Dimensions in Plant Cell Walls View Document |
Journal of Agricultural and Food Chemistry | Foston, M., R. Katahira, et al. (2012). "Solid-State Selective 13C Excitation and Spin Diffusion NMR To Resolve Spatial Dimensions in Plant Cell Walls." Journal of Agricultural and Food Chemistry 60 (6):1419–1427. | Research Area: Characterization and Modeling | 10.1021/jf204853b |
| 07/01/2010 | Foston | Changes In Lignocellulosic Supramolecular And Ultrastructure During Dilute Acid Pretreatment Of Populus And Switchgrass View Document |
Biomass and Bioenergy | Foston, M., Ragauskas, A. J., Changes in lignocellulosic supramolecular and ultrastructure during dilute acid pretreatment of Populus and switchgrass, Biomass and Bioenergy, Volume 34, Issue 12, pp 1885-1895, 2010. | Research Area: Characterization and Modeling | 10.1016/j.biombioe.2010.07.023 |
| 09/30/2010 | Foston | Changes in the Structure of the Cellulose Fiber Wall during Dilute Acid Pretreatment in Populus Studied by 1H and 2H NMR View Document |
Energy and Fuels | Foston, Marcus, Ragauskas, Arthur J., Changes in the Structure of the Cellulose Fiber Wall during Dilute Acid Pretreatment in Populus studies by 1H and 2H NMR, Energy Fuels, 2010, 24, 5677-5685. | Research Area: Characterization and Modeling | 10.1021/ef100882t |
| 07/25/2012 | Frock | Extreme thermophiles: moving beyond single-enzyme biocatalysis View Document |
Current Opinion in Chemical Engineering | Frock, A.D., Kelly, R.M., Extreme thermophiles: moving beyond single-enzyme biocatalysis, Current Opinion in Chemical Engineering, 1;4, pp 363-372, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.coche.2012.07.003 |
| 01/12/2012 | Fu | Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production View Document |
Plant Biotechnology Journal | Fu, C., R. Sunkar, et al. (2012). "Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production." Plant Biotechnology Journal, 10(4), 2012. | Research Area: Biomass Formation and Modification | 10.1111/j.1467-7652.2011.00677.x |
| 01/07/2011 | Fu | Downregulation of Cinnamyl Alcohol Dehydrogenase (CAD) Leads to Improved Saccharification Efficiency in Switchgrass View Document |
BioEnergy Research | Chunxiang Fu, Xirong Xiao, Yajun Xi, Yaxin Ge, Fang Chen, Joseph Bouton, Richard A. Dixon and Zeng-Yu Wang Downregulation of Cinnamyl Alcohol Dehydrogenase (CAD) Leads to Improved Saccharification Efficiency in Switchgrass, Bioenergy Research, 4;3, pp 153-164, 2011. | Research Area: Biomass Formation and Modification | 10.1007/s12155-010-9109-z |
| 03/01/2011 | Fu | Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass View Document |
PNAS | Fu, Chunxiang, Mielenz, Jonathan R., Xiao, Xirong, Ge, Yaxin, Hamilton, Choo Y., Rodriguez, Jr., Miguel, Chen, Fang, Foston, Marcus, Ragauskas, Arthur, Bouton, Joseph, Dixon, Richard A., Wang, Zeng-Yu, Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass, PNAS, 108(9): 3803-3808, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1073/pnas.1100310108 |
| 09/11/2011 | Gallego-Giraldo | Salicylic acid mediates the reduced growth of lignin down-regulated plants View Document |
PNAS | Gallego-Giraldo, L., Escamilla-Trevino, L., Jackson, L.A., Dixon, R.A. "Salicylic acid mediates the reduced growth of lignin down-regulated plant." PNAS. (Published online before print November 28, 2011, doi: 10.1073/pnas.1117873108) | Research Area: Biomass Formation and Modification | 10.1073/pnas.1117873108 |
| 11/01/2012 | Gao | Application of High Throughput Pretreatment and Co-Hydrolysis System to Thermochemical Pretreatment - Part 1: Dilute Acid | Biotechnology and Bioengineering | Gao, X., Kumar, R., DeMartini, J.D., Li, H., Wyman, C.E., Application of High Throughput Pretreatment and Co-Hydrolysis System to Thermochemical Pretreatment - Part 1: Dilute Acid, Biotechnology and Bioengineering, 2012 | Research Area: Characterization and Modeling | 10.1002/bit.24751 |
| 08/11/2011 | Ge | Pollen Viability and Longevity of Switchgrass
(Panicum virgatum L.) View Document |
Crop Science | Ge, Y., Fu, C., Bhandari, H., Bouton, J., Brummer, E.C., Wang, Z.Y., Pollen Viability and Longevity of Switchgrass (Panicum virgatum L.), Crop Science, volume 51, 2011. | Research Area: Biomass Formation and Modification | 10.2135/cropsci2011.01.0057 |
| 02/01/2013 | GhattyVenkataKrishna | Initial Recognition of a Cellodextrin Chain in the Cellulose-Binding Tunnel may affect cellobiohydrolase directional specificity View Document |
Biophysical Journal | GhattyVenkataKrishna, P.K., Alekozai, E.M., Beckham, G.T., Schulz, R., Crowley, M.F., Uberbacher, E.C., Cheng, X., Initial recognition of a cellodextrin chain in the cellulose-binding tunnel may affect cellobiohydrolase directional specificity, Biophysical Journal, 104, 904-912, 2013. | Research Area: Characterization and Modeling | 10.1016/j.bpj.2012.12.052 |
| 08/12/2011 | Ghimire | Enhancement of Switchgrass (Panicum virgatum L.) Biomass Production under Drought Conditions by the Ectomycorrihizal Fungus Sebacina vermifera View Document |
Applied and Environmental Microbiology | Ghimire, S.R., Craven, K.D.,The Ectomycorrhizal Fungus Sebacina vermifera, Enhances Biomass Production of Switchgrass (Panicum virgatum L.) Under Drought Conditions, Applied Microbiology and Biotechnology, 77(19):7063-7067, 2011 | Research Area: Biomass Formation and Modification | 10.1128/AEM.05225-11 |
| 06/01/2009 | Ghimire | The mycorrhizal fungus, Sebacina vermifera, enhances seed germination and biomass production in switchgrass (Panicum virgatum L) View Document |
BioEnergy Research | Ghimire, S. R, Charlton, N., and Craven, K. D. (2009). The mycorrhizal fungus, Sebacina vermifera, enhances seed germination and biomass production in switchgrass (Panicum virgatum L). Bioenergy Research 2: 51‐58, Volume 2, Numbers 1-2 / June, 2009 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9033-2 |
| 11/01/2010 | Ghimire | Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma View Document |
Fungal Diversity | Ghimire, S.R., Charlton, N.D., Bell, J.D., Krishnamurthy, Y.L. Craven, K.D., Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma, Fungal Diversity, 47;1, pp 19-27, 2010. | Research Area: Biomass Formation and Modification | 10.1007/s13225-010-0085-6 |
| 08/01/2012 | Gilbert | Bioprospecting Metagenomics for New Glycoside Hydrolases | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Gilbert, J., Li, Luen-Luen, Taghavi, S., McCorkle, S.M., Tringe, S., van der Lelie, D., Bioprospecting Metagenomics for New Glycoside Hydrolases, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;141-151, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_14 |
| 10/18/2012 | Gjersing | Rapid determination of sugar content in biomass hydrolysates using nuclear magentic resonance spectroscopy View Document |
Biotechnology and Bioengineering | Gjersing, E., Happs, R.M., Sykes, R.W., Doeppke, C., Davis, M.F., Rapid determination of sugar content in biomass hydrolysates using nuclear magnetic resonance spectroscopy, Biotechnology and Bioengineering, 110(3); 721-8, 2012. | Research Area: Characterization and Modeling | 10.1002/bit.24741 |
| 08/01/2008 | Goel | System estimation from metabolic time-series data sys View Document |
Bioinformatics | Goel, Gautam, I-Chun Chou and Eberhard O. Voit , System estimation from metabolic time-series data sys, Bioinformatics, 24(21), 2505-2511, 2008. | Research Area: Characterization and Modeling | 10.1093/bioinformatics/ btn470 |
| 06/07/2010 | Gu | Biosynthesis of a new UDP-sugar, UDP-2-Acetamido-2-deoxy-xylose, in the human pathogen Bacillus cereus subsp. cytotoxis NVH 391-98. View Document |
Journal of Biological Chemistry | Gu X, Glushka J, Lee SG, Bar-Peled M. (2010) Biosynthesis of a new UDP-sugar, UDP-2-acetamido-2-deoxyxylose, in the human pathogen Bacillus cereus subspecies cytotoxis NVH 391-98. J Biol Chem. 285(32):24825-33. | Research Area: Biomass Formation and Modification | 10.1074/jbc.M110.125872 |
| 09/16/2010 | Gu | Biosynthesis of UDP-xylose and UDP-arabinose in Sinorhizobium meliloti 1021: first characterization of a bacterial UDP-xylose synthase, and UDP-xylose-4-epimerase View Document |
Microbiology | Gu, X. G., Lee, S. G., Bar-Peled, M., Biosynthesis of UDP-xylose and UDP-arabinose in Sinorhizobium meliloti 1021: first characterization of a bacterial UDP-xylose synthase, and UDP-xylose 4-epimerase, Microbiology, Volume 157, pp 260-269, 2011. | Research Area: Biomass Formation and Modification | 10.1099/mic.0.040758-0 |
| 03/19/2010 | Gu | Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family View Document |
Journal of Biological Chemistry | Gu X, Glushka J, Yin Y, Xu Y, Denny T, Smith J, Jiang Y, Bar-Peled M.(2010) Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family. J Biol Chem. 2010 285(12):9030-40. | Research Area: Biomass Formation and Modification | 10.1074/jbc.M109.066803 |
| 06/15/2009 | Gu | Enzymatic characterization and comparison of various Poaceae UDP-GlcA 4-Epimerase Isoforms View Document |
Journal of Biochemistry | Gu X, Wages CJ, Davis KE, Guyett PJ, Bar-Peled M. (2009) Enzymatic characterization and comparison of various poaceae UDP-GlcA 4-epimerase isoforms. J Biochem. 146(4):527-34. | Research Area: Biomass Formation and Modification | 10.1093/jb/mvp099 |
| 05/06/2012 | Guss | Dcm methylation is detrimental to plasmid transformation in Clostridium thermocellum View Document |
Biotechnology for Biofuels | Guss, A.M., Olson, D.G., Caiazza, N.C., Lynd, L.R., Dcm methylation is detrimental to plasmid transformation in Clostridium thermocellum, Biotechnology for Biofuels, 5:30, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-30 |
| 03/27/2009 | Guyett | Real-time NMR monitoring of intermediates and labile products of the bifunctional enzyme UDP-apiose/UDP-xylose synthase View Document |
Carbohydrate Research | Guyett P, Glushka J, Gu X, Bar-Peled M. (2009) Real-time NMR monitoring of intermediates and labile products of the bifunctional enzyme UDP-apiose/UDP-xylose synthase. Carbohydr Res. 344(9):1072-8. | Research Area: Biomass Formation and Modification | PMID: 19375693 |
| 12/18/2009 | Hamilton-Brehm | Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park View Document |
Applied and Environmental Microbiology | Hamilton-Brehm, S.D., Mosher, J.J., Vishnivetskaya, T., Podar, M., Carroll, S., Allman, S., Phelps, T.J., Keller, M., Elkins, J.G., Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Applied and Environmental Microbiology, 76:1014-1020. 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.01903-09 |
| 08/01/2012 | Hamilton-Brehm | Anaerobic High-Throughput Cultivation Method for Isolation of Thermophiles Using Biomass-Derived Substrates | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Hamilton-Brehm, S.D., Vishnivetskaya, T.A., Allman, S.L., Mielenz, J.R., Elkins, J.G., Anaerobic High-Throughput Cultivation Method for Isolation of Thermophiles Using Biomass-Derived Substrates, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;153-168, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_15 |
| 01/04/2013 | Hamilton-Brehm | Thermodesulfobacterium geofontis sp. Nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park View Document |
Extremophiles | Hamilton-Brehm, S.D., Gibson, R.A., Green, S.J., Hopmans, E.C., Schouten, S., van der Meer, M.T.J., Shields, J.P., Damste, J.S.S., Elkins, J.G., Thermodesulfobacterium geofontis sp. Nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park, Extremophiles, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00792-013-0512-1) |
| 01/17/2013 | Hardin | Standardization of Switchgrass Sample Collection for cell wall and biomass trait analysis View Document |
Bioenergy Research | Hardin, C.F., Fu, C., Hisano, H., Xiao, X., Shen, H., Stewart Jr. C.N., Parrott, W., Dixon, R.A., Wang, Z-Y., Standardization of switchgrass sample collection for cell wall and biomass trait analysis, Bioenergy Research, 2013 | Research Area: Biomass Formation and Modification | 10.1007/s12155-012-9292-1 |
| 04/01/2011 | Higashide | Metabolic Engineering of Clostridium cellulolyticum for Isobutanol Production from Cellulose View Document |
Applied and Environmental Microbiology | Higashide, Wendy, Li, Yongchao, Yang, Yunfeng, Liao, James C., Metabolic engineering of Clostridium cellulolyticum for isobutanol production from cellulose, Applied Environmental Microbiology, 77(8): 2727-2733, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.02454-10 |
| 03/01/2010 | Himmel | Microbial enzyme systems for biomass conversion: emerging paradigms View Document |
Biofuels | Himmel, Michael E., Xu, Qi, Luo, Yonghua, Ding, Shi-You, Lamed, Raphael, Bayer, Edward A., Microbial enzyme systems for biomass conversion: emerging paradigms, Biofuels, March 2010, Vol. 1, No. 2, Pages 323-341, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1021/cm903135 |
| 08/01/2012 | Himmel | Challenges for Assessing the Performance of Biomass Degrading Biocatalysts | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Himmel, M.E., Decker, S.R., Johnson, D.K., Challenges for Assessing the Performance of Biomass Degrading Biocatalysts, 908:1-8, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_1 |
| 03/13/2009 | Hisano | Genetic modification of lignin biosynthesis for improved biofuel production View Document |
Journal of In Vitro Cellular and Developmental Biology – Plant | Hisano, H., Nandakumar, R., Wang, Z.Y., Genetic modification of lignin biosynthesis for improved biofuel production, Journal of In Vitro Cellular and Developmental Biology - Plant, 344;9, pp 1072-1078, 2009. | Research Area: Biomass Formation and Modification | 10.1007/s11627-009-9219-5 |
| 02/14/2012 | Holwerda | A defined growth medium with very low background carbon for culturing Clostridium thermocellum View Document |
Journal of Industrial Microbiology and Biotechnology | Holwerda, E., K. Hirst, et al. (2012). "A defined growth medium with very low background carbon for culturing Clostridium thermocellum." Journal of Industrial Microbiology and Biotechnology. (published ahead of print doi:10.1007/s10295-012-1091-3) | Research Area: Biomass Deconstruction and Conversion | 10.1007/s10295-012-1091-3 |
| 04/11/2013 | Holwerda | Testing alternative kinetic models for utilization of crystalline cellulose (Avicel) by batch cultures of Clostridium thermocellum | Biofuels and Environmental Biotechnology | Holwerda, E.K., Lynd, L.R., Testing alternative kinetic models for utilization of crystalline cellulose (Avicel) by batch cultures of Clostridium thermocellum, Biofuels and Environmental Biotechnology, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.24914 |
| 04/11/2013 | Holwerda | Development and evaluation of methods to infer biosynthesis and substrate consumption in cultures of cellulolytic microorganisms | Biotechnology and Bioengineering | Holwerda, E.K., Ellis, L.D., Lynd, L.R., Development and evaluation of methods to infer biosynthesis and substrate consumption in cultures of cellulolytic microorganisms, Biotechnology and Bioengineering, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.24915 |
| 07/01/2008 | Hong | Bioseparation of recombinant cellulose binding module-protein by affinity adsorption on an ultra-high-capacity cellulosic adsorbent View Document |
Analytica Chimica Acta | Hong, Jiong, Xinhao Ye, Yiran Wang and Y.-H. Percival Zhang Bioseparation of recombinant cellulose binding module-protein by affinity adsorption on an ultra-high-capacity cellulosic adsorbent, Analytica Chimica Acta, 621:193-199, 2008. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.aca.2008.05.041 |
| 06/20/2008 | Hong | Simple protein purification through affinity adsorption on regenerated amorphous cellulose followed by intein self-cleavage View Document |
Journal of Chromatography | Hong, Jiong, Yiran Wang, Xinhao Ye and Y.-H. Percival Zhang , Simple protein purification through affinity adsorption on regenerated amorphous cellulose followed by intein self-cleavage, Journal of Chromatography, A Volume 1194, Issue 2, 20, Pages 150-154, June 2008. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.chroma.2008.04.048 |
| 03/28/2012 | Hoover | Eliminating the scattering ambiguity in multifocal, multimodal, multiphoton imaging systems | Journal of Biophotonics | Hoover, E. E., J. J. Field, et al. (2012). "Eliminating the scattering ambiguity in multifocal, multimodal, multiphoton imaging systems." Journal of Biophotonics. (published online ahead of print doi:10.1002/jbio.2011001390) | Research Area: Characterization and Modeling | 10.1002/jbio.2011001390 |
| 09/25/2012 | Hu | Impact of Pseudolignin versus Dilute Acid-Pretreated Lignin on Enzymatic Hydrolysis of Cellulose View Document |
ACS Sustainable Chemistry and Engineering | Hu, F., Jung, S., Ragauskas, A., Impact of Pseudolignin versus Dilute Acid-Pretreated Lignin on Enzymatic Hydrolysis of Cellulose, ACS Sustainable Chemistry & Engineering, 1(1); 62-65, 2013. | Research Area: Characterization and Modeling | 10.1021/sc300032j |
| 04/01/2012 | Hu | Pseudo-lignin formation and its impact on enzymatic hydrolysis View Document |
Bioresource Technology | Hu, F., Jung, S., Ragauskas, A., Pseudo-lignin formation and its impact on enzymatic hydrolysis, Bioresource Technology, 117, 7-12, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2012.04.037 |
| 05/25/2012 | Hu | Pretreatment and Lignocellulosic Chemistry | BioEnergy Research | Hu, F., Ragauskas, A., Pretreatment and Lignocellulosic Chemistry, BioEnergy Research, 5:2, 2012. | Research Area: Characterization and Modeling | 10.1007/s12155-012-9208-0 |
| 05/01/2010 | Hu | Chemical Profiles of Switchgrass View Document |
Bioresource Technology | Hu, Z., R. Sykes, M.F. Davis, E.C. Brummer, and A.J. Ragauskas, Chemical profiles of switchgrass. Bioresource Technology.101:3253-3257.2009, May 2010. | Research Area: Characterization and Modeling | 10.1016/j.biortech.2009.12.033 |
| 12/01/2010 | Huang | Analysis of biofuels production from sugar based on three criteria: Thermodynamics, bioenergetics, and product separation View Document |
Energy and Environmental Science | Huang, W. D., Zhang, Y. H. P., Analysis of biofuels production from sugar based on three criteria: Thermodynamics, bioenergetics, and product separation, Energy and Environmental Science, Vol 4, Issue 3, pp 784, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1039/c0ee0069h |
| 07/01/2011 | Huang | Energy Efficiency Analysis: Biomass-to-Wheel Efficiency Related with Biofuels Production, Fuel Distribution, and Powertrain System View Document |
PloS One | Huang, W.D., Zhang, Y-H.P., Energy Efficiency Analysis: Biomass-to-Wheel Efficiency Related with Biofuels Production, Fuel Distribution, and Powertrain Systems. PLoS ONE 6(7): e22113, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1371/journal.pone.0022113 |
| 05/14/2010 | Hubbell | Effect of acid-chlorite delignification on cellulose degree of polymerization View Document |
Bioresource Technology | Hubbell, Christopher A., Ragauskas, Arthur J., Effect of acid-chlorite delignification on cellulose degree of polymerization, Bioresource Technology, 101, 7410-7415, 2010. | Research Area: Characterization and Modeling | 10.1016/j.biortech.2010.04.029 |
| 07/12/2012 | Hyatt | Gene and Translation Initiation Site Prediction in Metagenomic Sequences View Document |
Bioinformatics | Hyatt, D., LoCascio, P.F., Hauser, L.J., Uberbacher, E.C., Gene and Translation Initiation Site Prediction in Metagenomic Sequences, Bioinformatics, 2012 | Research Area: Characterization and Modeling | 10.1093/bioinformatics/bts429 |
| 03/08/2012 | Induri | Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus View Document |
Tree Physiology | Iduri, B.R., Ellis, D.R., Slavov, G.T., Yin, T., Zhang, X., Muchero, W., Tuskan, G.A., DiFazio, S.P., Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus, Tree Physiology, 00, 1-13, 2012. | Research Area: Biomass Formation and Modification | 10.1093/treephys/tps032 |
| 03/12/2012 | Izquierdo | Complete Genome Sequence of Clostridium clariflavum DSM 19732 View Document |
Standards In Genomic Sciences | Izquierdo, J. A., L. Goodwin, et al. (2012). Complete Genome Sequence of Clostridium clariflavum DSM 19732. Standards In Genomic Sciences: 6(1). | Research Area: Biomass Deconstruction and Conversion | 10.4056/sigs.2535732 |
| 06/01/2010 | Izquierdo | Diversity of bacteria and glycosyl hydrolase family 48 genes in cellulolytic consortia enriched from thermophilic biocompost View Document |
Applied and Environmental Microbiology | Izquierdo, J. A., Sizova, M. V., Lynd, L. R., Diversity of Bacteria and Glycosyl Hydrolase Family 48 Genes in Cellulolytic Consortia Enriched from Thermophilic Biocompost, Applied and Environmental Microbiology, Volume 76, Issue 11, pp 3545-3553, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.02689-09 |
| 10/01/2010 | Jiang | Rapid determination of lignin content via direct dissolution and 1H NMR analysis of the plant cell walls View Document |
ChemSusChem | Jiang, N., Pu, Y. Q., Ragauskas, A. J., Rapid Determination of Lignin Content via Direct Dissolution and H-1 NMR Analysis of Plant Cell Walls, Chemsuschem, Volume 3, Issue 11, pp 1285-1289, 2010. | Research Area: Characterization and Modeling | 10.1002/cssc.201000120 |
| 10/01/2010 | Jiang | Time-Resolved NMR: Extracting the Topology of Complex Enzyme
Networks View Document |
Biophysical Journal | Jiang, Yingnan, McKinnon, Tyler, Varatharajan, Janani, Glushka, John, Prestegard, James H., Sornborger, Andrew T., Schuttler, Heiza-Berd, Bar-Peled, Maor, Time-Resolved NMR: Extracting the Topology of Complex Enzyme Networks, Biophysical Journal, 99(7):2318-26, 2010. | Research Area: Biomass Formation and Modification | 10.1016/j.bpj.2010.08.014 |
| 01/01/2009 | Jiang | Perdeuterated pyridinium molten salt (ionic liquid) for direct dissolution and NMR analysis of the plant cell walls View Document |
Green Chemistry | Jiang, N., Pu, Y., Ragauskas, R.J., Perdeuterated pyridinium molten salt (ionic liquid) for direct dissolution and NMR analysis of the plant cell walls, Green Chemistry, 11, 1762 - 1766, 2009. | Research Area: Characterization and Modeling | 10.1039/b913609f |
| 08/12/2011 | Joyce | Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuels and products View Document |
Biotechnology Advances | Joyce, B.L., Stewart Jr., C.N. (2011) "Designing the perfect plant feedstock for biofuel production: Using the whole buffalo to diversify fuels and products." Biotechnology Advance (published ahead of print doi:10.1016/j.biotechadv.2011.08.006 | Research Area: Biomass Formation and Modification | 10.1016/j.biotechadv.2011.08.006 |
| 11/30/2010 | Jung | Direct analysis of cellulose in poplar stem by matrix-assisted laser desorption/ionization imaging mass spectrometry View Document |
Rapid Communications in Mass Spectrometry | Jung, S., Chen Y., Sullards, M.C., Ragauskas, A.J, Direct analysis of cellulose in poplar stem by matrix-assisted laser desorption/ionization imaging mass spectrometry, Rapid Communications in Mass Spectrometry, volume 24, Issue 22, pp 3230-3236, 2010. | Research Area: Characterization and Modeling | 10.1002/rcm.4757 |
| 01/11/2010 | Jung | Surface Characterization of Dilute Acid Pretreated Populus deltoides by ToF-SIMS View Document |
Energy and Fuels | Seokwon Jung, Marcus Foston, M. Cameron Sullards, and Art J. Ragauska, Surface Characterization of Dilute Acid Pretreated Populus deltoides by ToF-SIMS, Energy and Fuels, 24 (2), pp 1347-1357, 2011. | Research Area: Characterization and Modeling | 10.1021/ef901062p |
| 09/28/2012 | Jung | 3D Chemical Image using TOF-SIMS Revealing the Biopolymer Component Spatial and Lateral Distributions in Biomass View Document |
Angewandte Chemie | Jung, S., Foston,k M., Kalluri, U., Tuskan, G.A., Ragauskas, A.J., 3D Image using TOF-SIMS Revealing the Biopolymer Component Spatial and Lateral Distribution in Biomass,m Angewandte Chemiek. 51 (48):12005-8, 2012. | Research Area: Characterization and Modeling | 10.1002/anie.201205243 |
| 11/01/2009 | Kalluri | Shotgun proteome profile of Populus developing xylem View Document |
Proteomics | Kalluri, U, Hurst G, Lankford P, Ranjan P and Pelletier D, Shotgun proteome profile of Populus developing xylem, Proteomics, Volume 9, Issue 21, 2009. Pages: 4871-4880, 2009. | Research Area: Biomass Formation and Modification | |
| 06/11/2010 | Kalluri | Bioenergy Research: A new paradigm in multidisciplinary research View Document |
Journal of the Royal Society Interface | Kalluri U.C and Keller M, “Bioenergy Research: A new paradigm in multidisciplinary research” (2010) Journal of the Royal Society Interface. 7 (51):1391‐1401, 2010. | Research Area: Biomass Formation and Modification | 10.1098/rsif.2009.0564. |
| 04/11/2010 | Kang | Transgenic hybrid aspen overexpressing the Atwbc19 gene encoding an ATP-binding cassette transporter confers resistance to four aminoglycoside antibiotics View Document |
Plant Cell Reports | Kang, B.G., Xia, Y., Osburn, L.D., Stewart Jr., C.N., Cheng, Z.M., Transgenic hybrid aspen overexpressing the Atwbc19 gene encoding an ATP-binding cassette transporter confers resistance to four aminoglycoside antibiotics, Plant Cell Reports, 2010, 29:643-650, 2010. | Research Area: Biomass Formation and Modification | 10.1007/s00299-010-0850-8 |
| 12/01/2009 | Kang | Micropropagation of Populus trichocarpa 'Nisqually-1': The genotype deriving the Populus reference genome View Document |
Plant Cell, Tissue and Organ Culture (PCTOC) - Journal of Plant Biotechnology | Kang, B.G., Osburn, Lori, Kopsell, Dean, Tuskan, G.A., Cheng, Z.M., Micropropagation of Populus trichocarpa 'Nisqually-1': The genotype deriving the Populus reference genome, Journal of Plant Biotechnology, 99(3):251-257, 2009. | Research Area: Biomass Formation and Modification | 10.1007/s11240-009-9596-9 |
| 02/26/2009 | Karpinets | Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris View Document |
PLoS One | Karpinets, T., Pelletier, D, Pan, C., Uberbacher, E.C., Melnichenko, G.V., Hettich, R.L., Samatove, N.F., Phenotype fingerprinting suggests the imvolvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris, PLoS ONE, 4(2):e4615, 2009. | Research Area: Biomass Deconstruction and Conversion | |
| 05/25/2012 | Karpinets | Analyzing large biological datasets with associated networks View Document |
Nucleic Acids Research | Karpinets, T.V., Park, B.H., Uberbacher, Analyzing large biological datasets with association networks, Nucleic Acids Research, 1-8, 2012. | Research Area: Characterization and Modeling | 10.1093/nar/gks403 |
| Kataeva | Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature | Energy and Environmental Science | Kataeva, I., Foston, M.B., Yang, S., Pattathil, S., Biswal, A.K., Poole, F.L., Basen, M., Rhaesa, A.M., Thomas, T.P., Azadi, P., Olman, V., Safford, T.D., Mohler, K.E., Lewis, D.L., Doeppke, C., Zeng, Y., Tschaplinski, T.J., York, W., Davis, M., Mohnen, D., Xu, Y., Ragauskas, A.J., Ding, S.Y., Kelly, R.M., Hahn, M.G., Adams, W.W.M., Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature, Energy and Environmental Science, 2013 | Research Area: Biomass Formation and Modification | 10.1039/C3EE40932E | |
| 06/01/2009 | Kataeva | Genome Sequence of the Anaerobic, Thermophilic and Cellulolytic Bacterium Anaerocellum thermophilum DSM 6725 View Document |
Journal of Bacteriology | Kataeva IA, Yang SJ, Dam P, Poole FL, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams WW, Genome Sequence of the Anaerobic, Thermophilic and Celluloytic Bacterium Anaerocellum thermophilum, Journal of Bacteriology, Jun;191(11):3760-1, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.00256-09 |
| 08/01/2010 | Kausch | Genetic modification in dedicated bioenergy crops and strategies for gene confinement. View Document |
Biotechnology in Agriculture and Forestry | Kausch A.P., J. Hague, M. Oliver, Y. Li, H. Daniell, P.Mascia, C.N. Stewart, Jr. 2010. Genetic modification in dedicated bioenergy crops and strategies for gene confinement. Pp. 299-315. In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg.. | Research Area: Biomass Formation and Modification | 10.1007/978-3-642-13440-1_11 |
| 08/01/2010 | Kausch | Gene flow in genetically engineered perennial grasses: lessons for modification of dedicated bioenergy crops View Document |
Biotechnology in Agriculture and Forestry | Kausch, A.P., J. Hague, M. Oliver, L . S . Watrud, C. Mallory-Smith, V. Meier, A. Snow, and C. N. Stewart, Jr. 2010. Gene flow in genetically engineered perennial grasses: lessons for modification of dedicated bioenergy crops. Pp. 285-298, In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg | Research Area: Biomass Formation and Modification | 10.1007/978-3-642-13440-1_10 |
| 01/01/2010 | Kausch | Transgenic perennial biofuel feedstocks and strategies for bioconfinement View Document |
Biofuels | Kausch, A.P., J. Hague, M. Oliver, Y. Li, H. Daniell, P. Maschia, L.S. Watrud, and C.N.Stewart, Jr., Transgenic perennial biofuel feedstocks and strategies for bioconfinement, Biofuels, Vol 1; Issue 1; p. 163-176, 2010. | Research Area: Biomass Formation and Modification | 10.4155/BFS.09.11 |
| 01/01/2009 | Keller | Single-Cell Genomics | Accessing Uncultivated Microorganisms | Keller, M., Schadt, C.W., Palumbo, A.V., Environment to Organisms and Genomes and Backed. Karsten Zengler, (2009), ASM Press. | Research Area: Biomass Deconstruction and Conversion | |
| 01/07/2008 | Keller | Microbial goods from single cells and metagenomes View Document |
Current Opinion in Microbiology | Keller, Martin, Ramos, Juan L., 2008, Microbial goods from single cells and metagenomes, Current Opinion in Microbiology, 11(3), 195-197, 2008. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.mib.2008.05.003 |
| 03/09/2009 | Keller | Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level View Document |
Microbiology and Molecular Biology Reviews | Keller, Martin, Hettich, Robert, Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level, Microbiology and Molecular Biology Reviews, March 2009, p. 62-70, Vol. 73, No. 1 | Research Area: Biomass Deconstruction and Conversion | 10.1128/MMBR.00028-08 |
| 12/21/2009 | Kim | Piezoresistive cantilever array sensor for consolidated bioprocess monitoring View Document |
Scanning | Kim, S., Rahman, T., Senesac, L.R., Davison, B.H., Thundat, T., Piezoresistive cantilever array sensor for consolidated bioprocess monitoring, Scanning, Volume 31 Issue 5; Pages 204-210 epub | Research Area: Characterization and Modeling | 10.1002/sca.20159 |
| 09/01/2009 | Kong | Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis View Document |
Molecular Plant | Yingzhen Konga, Gongke Zhoua, Utku Avcia, Xiaogang Gua, Chelsea Jonesa, Yanbin Yin, Ying Xu, and Michael G. Hahn, Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis, Molecular Plant, Volume 2, Number 5, Pages 1040–1050, 2009 | Research Area: Biomass Formation and Modification | 10.1093/mp/ssp068 |
| 01/01/2012 | Kostylev | Synergistic interactions in cellulose hydrolysis View Document |
Biofuels | Kostylev, M. and D. Wilson (2011). "Synergistic interactions in cellulose hydrolysis." Biofuels 3(1): 61-70. | Research Area: Biomass Deconstruction and Conversion | 10.4155/bfs.11.150 |
| 07/15/2011 | Kostylev | Determination of the catalytic base in family 48 glycosyl hydrolases View Document |
Applied Environmental Microbiology | Kostylev, M., Wilson, D.B., Determination of the catalytic base in family 48 glycosyl hydrolases, Applied Environmental Microbiology, 77;17, pp 6274-6276, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.05532-11 |
| 11/02/2011 | Kulkarni | The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes View Document |
Glycobiology | Kulkarni, A., M. J. Peña, et al. (2012). "The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes." Glycobiology 22 (3): 439-451. | Research Area: Biomass Formation and Modification | 10.1093/glycob/cwr117 |
| 08/01/2012 | Kulkarni | Comparison of Arabinoxylan Structure in Bioenergy and Model Grasses View Document |
Industrial Biotechnology | Kulkarni, A.R., Pattathil, S., Hah, M.G., York, W.S., O'Neill, M.A., Comparison of Arabinoxylan Structure in Bioenergy and Model Grasses, Industrial Biotechnology, 2012 | Research Area: Biomass Formation and Modification | 10.1089/ind.2012.0014 |
| Kumar | Physical and chemical features of pretreated biomass that influence macro-micro-accessibility and biological processing | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Kumar, R., Wyman, C.E., Physical and chemical features of pretreated biomass that influence macro-micro-accessibility and biological processing, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 14, pp 281-296, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch14 | |
| 10/01/2012 | Kumar | Carbohydrate Derived-Pseudo-Lignin can retard cellulose biological conversion View Document |
Biotechnology and Bioengineering | Kumar, R., Hu. F., Sannigrahi, P., Jung, S., Ragauskas, A.J., Wyman, C.E., Carbohydrate Derived-Pseudo-Lignin Can Retard Cellulose Biological Conversion, Biotechnology and Bioengineering, 2012 | Research Area: Characterization and Modeling | 10.1002/bit.24744 |
| 12/05/2012 | Kumar | Comparison of Laboratory Delignification Methods, their selectivity, and impacts on physiochemical characteristics of cellulosic biomass | Bioresource Technology | Kumar, R., Hu, F., Hubbell, C.A., Ragauskas, A.J., Wyman, C.E., Comparison of Laboratory delignification methods, their selectivity, and impacts on physiochemical characteristics of cellulosic biomass, Bioresource Technology, 130: 372-381, 2012. | Research Area: Characterization and Modeling | 10.1016/j.biortech.2012.12.028 |
| 01/01/2012 | Kwit | Gene flow matters in switchgrass (Panicum virgatum L.,) a potential widespread biofuel feedstock View Document |
Ecological Applications | Kwit, C., Stewart, C. N. (2012). Gene flow matters in switchgrass (Panicum virgatum L.), a potential widespread biofuel feedstock, Ecological Applications 22(1):3-7. | Research Area: Biomass Formation and Modification | 10.1890/11-1516.1 |
| 06/30/2010 | Lacayo | Imaging Cell Wall Architecture in Single Zinnia elegans Tracheary Elements View Document |
Plant Physiology | Lacayo, C.I., Malkin, A.J., Holman, H.Y.N., Chen, L., Ding, S.Y., Hwang, M.S., Thelen, M.P., Imaging Cell Wall Architecture in Single Zinnia elegans Tracheary Elements, Plant Physiology, Volume 154, Issue 1, Pages 121-133, 2010. | Research Area: Characterization and Modeling | 10.1104/pp.110.155242 |
| 05/16/2011 | Lee | Integrative Analysis of Transgenic Alfalfa (Medicago sative L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis View Document |
PloS Computational Biology | Lee, Y., Chen, F., Gallego-Giraldo, L., Dixon, Richard A., Voit, E.O., Integrative Analysis of Transgenic Alfalfa (Medicago sative L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis, PLoS Computational Biology, Volume 7, Issue 5, 2011. | Research Area: Characterization and Modeling | 10.1371/journal.pcbi.1002047 |
| 09/01/2010 | Lee | Mathematical modeling of monolignol biosynthesis in Populus xylem View Document |
Mathematical Biosciences | Lee, Y., Voit, E.O., Mathematical modeling of monolignol biosysthesis in Populus xylem, Mathematical Bioscience, Volume 228, Issue 1, pp 78-89, 2010. | Research Area: Characterization and Modeling | 10.1016/j.mbs.2010.08.009 |
| 07/27/2009 | Lee | Effects of gold patterning on the bending profile and frequency response of a microcantilever View Document |
Journal of Applied Physics | Lee D, Kim S, Jung N, Thundat T, Jeon S. Effects of gold patterning on the bending profile and frequency response of a microcantilever. Journal of Applied Physics 2009;106(2):7, 2009. | Research Area: Characterization and Modeling | 10.1063/1.3177326 |
| 02/01/2011 | Lee | Analysis of Operating Principles with S-system Models View Document |
Mathematical Biosciences | Lee, Y., Chen, Po-Wei, Voit, Eberhard O., 2011, Analysis of Operating Principles with S-system Models, Mathematical Biosciences, 231(1): 49-60, 2011. | Research Area: Characterization and Modeling | 10.1016/j.mbs.2011.03.001 |
| 02/08/2012 | Lee | Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality View Document |
Biotechnology for Biofuels | Lee, S., T. Warnick, et al. (2012). "Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality." Biotechnology for Biofuels 5(1): 5. | Research Area: Biomass Formation and Modification | 10.1186/1754-6834-5-5 |
| 11/08/2012 | Lee | Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach View Document |
PLOS Computational Biology | Lee, Y., Escamilla-Trevino, L., Dixon, R.A., Voit, E.O., Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach, PLOS Computational Biology, 8:11, 2012. | Research Area: Characterization and Modeling | 10.1371/journal.pcbi.1002769 |
| 05/30/2012 | Leuze | Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA View Document |
Gene Regulation and Systems Biology | Leuze, M.R., Karpinets, T.V., Syed, M.H., Beliaev, A.S., Uberbacher, E.C., Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA, Gene Regulation and Systems Biology, 6 93-107, 2012. | Research Area: Characterization and Modeling | 10.4137/GRSB.S9357 |
| 06/06/2012 | Li | Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes View Document |
Biotechnology for Biofuels | Li, M., Foster, C., Kelkar, S., Pu, Y., Holmes, D., Ragauskas, A., Saffron, C., Hodge, D.B., Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes, Biotechnology for Biofuels, 5:38, 2012. | Research Area: Characterization and Modeling | 10.1186/1754-6834-5-38 |
| 03/29/2012 | Li | Chemical Composition and Characterization of Cellulose for Agave as a Fast Growing, Drought Tolerant Biofuels Feedstock View Document |
RSC Advances | Li, H., M. B. Foston, et al. (2012). "Chemical Composition and Characterization of Cellulose for Agave as a Fast Growing, Drought Tolerant Biofuels Feedstock." RSC Advances. (published online ahead of print doi:10.1039/C2RA20557B) | Research Area: Characterization and Modeling | 10.1039/C2RA20557B |
| 09/29/2011 | Li | Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes View Document |
Nucleic Acids Research | Li, G., Q. Ma, et al. (2011). "Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes." Nucleic Acids Research 39(22): e150 | Research Area: Characterization and Modeling | 10.1093/nar/gkr766 |
| 01/04/2012 | Li | Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations View Document |
Biotechnology for Biofuels | Yongchao Li, Timothy J Tschaplinski, Nancy L Engle, Choo Y Hamilton, Miguel Rodriguez, James C Liao, Christopher W Schadt, Adam M Guss, Yunfeng Yang and David E Graham. (2012). "Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations." Biotechnology for Biofuels 5:2. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-2 |
| 12/01/2012 | Li | Complete genome sequence of Clostridium sp. Strain BNL1100, a cellulolytic mesophile isolated from corn stover View Document |
Journal of Bacteriology | Li, L.L., Taghavi, S., Izquierdo, J.A., van der Lelie, D., Complete genome sequence of Clostridium sp. Strain BNL1100, a cellulolytic mesophile isolated from corn stover, Journal of Bacteriology, 194(24), p 69820-6983, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.01908-12 |
| Li | Application of high throughput pretreatment and co-hydrolysis system to thermochemical pretreatment. Part 2: dilute alkali | Biofuels and Environmental Biotechnology | Li, H., Gao, X., DeMartini, J.D., Kumar, R., Wyman, C.E., Application of high throughput pretreatment and co-hydrolysis system to thermochemical pretreatment. Part 2: dilute alkali, Biofuels and Environmental Biotechnology, 2013 | Research Area: Characterization and Modeling | 10.1002/bit.24951 | |
| 03/19/2013 | Li | Chromatographic determination of 1, 4-b-xylooligosaccharides
of different chain lengths to follow xylan deconstruction in biomass conversion View Document |
Journal of Industrial Microbiology & Biotechnology | Li, H., Qing, Q., Kumar, R., Wyman, C.E., Chromatographic determination of 1, 4-b-xylooligosaccharides of different chain lengths to follow xylan deconstruction in biomass conversion, Journal of Industrial Microbiology Biotechnology, 2013 | Research Area: Characterization and Modeling | 10.1007/s10295-013-1254-x |
| 09/29/2010 | Li | A new framework for identifying cis-regulatory motifs in prokaryotes View Document |
Nucleic Acids Research | Li, G., Liu, B.Q., Ma, Q., Xu, Y., A new framework for identifying cis-regulatory motifs in prokaryotes, Nucleic Acids Research, v 39, no. 7, 2011. | Research Area: Characterization and Modeling | 10.1093/nar/gkq948 |
| 02/01/2009 | Li | Bioprospecting metagenomes: Glycosyl hydrolases for converting biomass View Document |
Biotechnology for Biofuels | Li, L. L., McCorkle, S. R., Monchy, S., Taghavi, S., van der Lelie, D., Bioprospecting metagenomes: glycosyl hydrolases for converting biomass, Biotechnology for Biofuels, Volume 2, pp 11, 4:23, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-2-10 |
| 08/04/2011 | Li | Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases View Document |
Biotechnology for Biofuels | Li, L.L., Taghavi, S., McCorkle, S.M., Zhang, Y.B., Blewitt, M.G., Bruneck, R., Adney, W.S., Himmel, M.E., Brumm, P., Drinkwater, C., Mead, D.A., Tringe, S.G., van der Lelie, D., Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases, Biotechnology for Biofuels, 4:23, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-4-23 |
| 04/01/2010 | Li | Increased Crystalline Cellulose Activity via Combinations of Amino Acid Changes in the Family 9 Catalytic Domain and Family 3c Cellulose Binding Module of Thermobifida fusca Cel9A View Document |
Applied and Environmental Microbiology | Li, Y., Irvin, D.C., Wilson, D.B., Increased Crystalline Cellulose Activity via Combinations of Amino Acid Changes in the Family 9 Catalytic Domain and Family 3c Cellulose Binding Module of Thermobifida fusca Cel9A, Applied and Environmental Microbiology, Volume 76, Issue 8, pp 2582-2588, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.02735-09 |
| 07/16/2011 | Liao | One-step purification and immobilization of thermophilic polyphosphate glucokinase from Thermobifida fusca YX: glucose-6-phosphate generation without ATP View Document |
Applied Microbiology and Biotechnology | Liao, H.H., Myung, Suwan, Zhang, Y-HP., One-step purification and immobilization of thermophilic polyphosphate glucokinase from Thermobifida fusca YX: glucose-6-phosphate generation without ATP, Applied Microbiology and Biotechnology, 93:1109-1117. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00253-011-3458-1 |
| 07/01/2011 | Liao | A minimal set of bacterial cellulases for consolidated bioprocessing of lignocelluloses View Document |
Biotechnology Journal | Liao, H.H., Zhang, X.Z., Rollin, J.A., Zhang, Y-H.P, A minimal set of bacterial cellulases for consilodated bioprocessing of lignocelluloses, Biotechnology Journals, 6(11):1409-1418, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1002/biot.201100157 |
| 01/01/2010 | Lindedam | Near Infrared Spectroscopy as a Screening Tool for Sugar Release and Chemical Composition of Wheat Straw View Document |
Journal of Biobased Materials and Bioenergy | Lindedam, J., Bruun, S., DeMartini, J., Jorgensen, H. Felby, C., Yang, B., Wyman C.E., Magid, J., Near Infrared Spectroscopy as a Screening Tool for Sugar Release and Chemical Composition of Wheat Straw, Journal of Biobased Materials and Bioenergy, 4, 1-6, 2010. | Research Area: Characterization and Modeling | 10.1166/jbmb.2010.1104 |
| 12/29/2011 | Lindedam | Cultivar variation and selection potential relevant to the production of cellulosic ethanol from wheat straw View Document |
Biomass and Bioenergy | Lindedam, J., S. B. Andersee, et al. (2012). "Cultivar variation and selection potential relevant to the production of cellulosic ethanol from wheat straw." Biomass and Bioenergy 37:221–228. | Research Area: Characterization and Modeling | 10.1016/j.biombioe.2011.12.009 |
| 08/01/2012 | Liu | Single-Molecule Tracking of Carbohydrate-Binding Modules on Cellulose Using Fluorescence Microscopy | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Liu, Y.S., Ding, S.Y., Himmel, M.E., Single-Molecule Tracking of Carbohydrate-Binding Modules on Cellulose Using Fluorescence Microscopy, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;129-140, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_13 |
| 09/01/2009 | Liu | The family 1 glycoside hydrolase from Clostridium cellulolyticum H10 is a cellodextrin glucohydrolase. View Document |
Applied Biochemistry and Biotechnology | Liu W, Bevan DR, Zhang Y-HP,The family 1 glycoside hydrolase from Clostridium cellulolyticum H10 is a cellodextrin glucohydrolase, Applied Biochemistry and Biotechnology, 161:1-8, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s12010-009-8782-x |
| 12/01/2009 | Liu | A single molecule study of cellulase hydrolysis of crystalline cellulose View Document |
Spie-Int Soc Optical Engineering | Liu, Y. S., Luo, Y. H., Baker, J. O., Zeng, Y. N., Himmel, M. E., Smith, S., Ding, S. Y., A single molecule study of cellulase hydrolysis of crystalline cellulose, Spie-Int Soc Optical Engineering, Volume 7571; 757103; 2010 | Research Area: Characterization and Modeling | 10.1117/12.840975 |
| 02/01/2011 | Liu | Cellobiohydrolase Hydrolyzes Crystalline Cellulose on Hydrophobic Faces View Document |
Journal of Biological Chemistry | Liu, Yu-San, Baker, John O., Zeng, Yining, Himmel, Michael E., Haas, Thomas, Ding, Shi-You, Cellobiohydrolase Hydrolyzes Crystalline Cellulose on Hydrophobic Faces, Journal of Biological Chemistry, 286:11195-11201, 2011. | Research Area: Characterization and Modeling | |
| 06/19/2009 | Liu | Does the Cellulose-Binding Module Move on the Cellulose Surface? View Document |
Cellulose | Liu, Yu-San, Yining Zeng, Yonghua Luo, Qi Xu, Michael E. Himmel, Steve J. Smith, and Shi-You Ding , Does the Cellulose-Binding Module Move on the Cellulose Surface?, Cellulose, 2009, 16(4):587-597, 2009. | Research Area: Characterization and Modeling | 10.1007/s10570-009-9306-0 |
| 06/01/2010 | Liu | Engineering of Clostridium phytofermentans endoglucanase Cel5A for improved thermostability View Document |
Applied and Environmental Microbiology | Liu, W.J., Zhang, X.A., Zhang, Z.M., Zhang, Y.H.P., Engineering of Clostridium phytofermentans Endoglucanase Cel5A for Improved Thermostability, Applied and Environmental Microbiology, Volume 76, Issue 14, pp 4914-4917, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.00958-10 |
| 04/01/2009 | Liu | Fast identification of thermostable beta-glucosidase mutants on cellobiose by a novel combinatorial selection/screening approach View Document |
Biotechnology and Bioengineering | Liu, W.J., Hong, J., Bevan, D.R., Zhang, Y.H.P., Fast Identification of Thermostable Beta-Blucosidase Mutants on Cellobiose by a Novel Combinatorial Selection/Screening Approach, Biotechnology and Bioengineering, Volume 103 Issue 6, Pages 1087 - 1094, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22340 |
| 04/01/2008 | Ljungdahl | Contribution of domain interactions and calcium binding to the stability of carbohydrate-Active enzymes View Document |
Bioenergy | Ljungdaho, L.G., Kataeva, I.A., Uversky, V.V., Contribution of domain interactions and calcium binding to the stability of carbohydrate-Active enzymes, Bioenergy, Judy D. Wall, Caroline S. Harwood and Arnold Demain eds., ASM Press, washington, DC, p.115-127, 2008. | Research Area: Biomass Deconstruction and Conversion | ISBN-13: 9781555814786 |
| 04/15/2011 | Lochner | Label-free quantitative proteomics distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis View Document |
Applied Environmental Microbiology | Lochner, Adriane, Giannone, Richard J., Rodriquez Jr., Miguel, Shah, Manesh, B., Mielenz, Jonathan R., Keller, Martin, Antranikian, Garabed, Graham, David E., Hettich, Roberts L., 2011, Label-free quantitative proteomics distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis, Applied Environmental Microbiology, 77(12): 4042-4054, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.02811-10 |
| 10/11/2011 | Lochner | Label-free Quantitative Proteomics for the Extremely Thermophilic Bacterium Caldicellulsiruptor obsidiansis Reveal Distinct Abundance Patterns upon Growth on Cellobiose, Crystalline Cellulose, and Switchgrass View Document |
Journal of Proteome Research | Lochner, A., Giannone, R.J., Keller, M., Antranikian, G., Graham, D.E., Hettich, R.L., Label-free Quantitative Proteomics for the Extremely Thermophilic Bacterium Caldicellulosiruptor obsidiansis Reveal Distinct Abundance Patterns upon Growth on Cellobiose, Crystalline Cellulose, and Switchgrass, Journal of Proteome Research, 10(12), 5302-5314, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1021/pr200536j |
| Lynd | Cellulosic Biofuels: Importance, Recalcitrance, and Pretreatment | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Lynd, L., Laser, M., Cellulosic Biofuels: Importance, Recalcitrance, and Pretreatment, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 2, pp 17-21, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.1002/9780470975831.ch2 | |
| 02/01/2008 | Lynd | How biotech can transform biofuels View Document |
Nature Biotechnology | Lynd, L. R., Laser, M. S., Brandsby, D., Dale, B. E., Davison, B., Hamilton, R., Himmel, M., Keller, M., McMillan, J. D., Sheehan, J., Wyman, C. E., How Biotech can transform biofuels, Nature Biotechnology, 26(2), 169-172, 2008. | Research Area: Biomass Deconstruction and Conversion | 10.1038/nbt0208-169 |
| 04/17/2013 | Ma | Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions View Document |
Nucleic Acids Research | Ma, Q., Yin, Y., Schell, M.A., Zhang, H., Li, G., Xu, Y. ,Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions, Nucleic Acids Research, 1-10, 2013. | Research Area: Characterization and Modeling | 10.1093/nar/gkt261 |
| 01/25/2013 | Ma | Global genomic arrangement of bacterial genes is closely tied with the total transcriptional efficiency View Document |
Genomics, Proteomics & Bioinformatics | Ma, Q., Xu, Y., Global genomic arrangement of bacterial genes is closely tied with the total transcriptional efficiency, Genomics, Proteomics & Bioinformatics, 2012 | Research Area: Characterization and Modeling | 10.1016/j.gpb.2013.01.004 |
| 12/01/2009 | Machina | Automated piecewise power-law modeling of biological systems View Document |
Journal of Biotechnology | Machina, A., Ponosovb, Ar., Voit, E.O., Automated piecewise power-law modeling of biological systems, Journal of Biotechnology, Volume 149, Issue 3, Special Issue SI, pp 154-165, 2009. | Research Area: Characterization and Modeling | 10.1016/j.jbiotec.2009.12.016 |
| 01/01/2011 | Mann | pANIC: A versatile set of Gateway-compatible vectors for gene overexpression and RNAi-mediated down-regulation in monocots View Document |
Plant Transformation Technologies | Mann, D.G.J, P.R. LaFayette, L.G Abercrombie, W.A. Parrott, C.N. Stewart, Jr. , pANIC: A versatile set of Gateway-compatible vectors for gene overexpression and RNAi-mediated down-regulation in monocots, Plant Transformation Technologies, pp 161-168. 2011. | Research Area: Biomass Formation and Modification | ISBN: 978-0-8138-2195-5 |
| 07/11/2011 | Mann | Switchgrass (Panicum virgatum L.) ubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation View Document |
BMC Biotechnology | Mann, D.G., King, Z.R., Liu, W., Joyce, B.L., Percifield, R.J., Hawkins, J.S., LaFayette, Peter R., Artelt, B.J., Burris, J.N., Mazarei, M., Bennetzen, J.L., Parrott, W.A., Stewart Jr., C. Neal, Switchgrass (Panicum virgatum L.) ubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation, BMC Biotechnology, 11:74,2011. | Research Area: Biomass Formation and Modification | 10.1186/1472-6750-11-74 |
| 12/01/2009 | Mann | Rapid assessment of lignin content and structure in switchgrass (Panicum virgatum L.) grown under different environmental conditions View Document |
BioEnergy Research | David G.J. Mann, Nicole Labbé, Robert W. Sykes, Kristen Gracom, Lindsey Kline, Isabella M. Swamidoss, Jason N. Burris, Mark Davis, C. Neal Stewart, Jr., Rapid assessment of lignin content and structure in switchgrass (Panicum virgatum L.) grown under different environmental conditions, Bioenergy Research, Volume 2, Number 4 / December, 2009 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9054-x |
| 09/28/2011 | Mann | Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species View Document |
Plant Biotechnology Journal | Mann, G.J., LaFayette, P.R., Abercrombie, L.L., King, Z.R., Mazarei, M., Halter, M.C., Poovaiah, C.R., Baxter, H., Shen, H., Dixon, R.A., Parrott, W.A., Stewart Jr., C.N. (2012) "Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.)." Plant Biotechnology Journal 10(2):226–236. | Research Area: Biomass Formation and Modification | 10.1111/j.1467-7652.2011.00658.x |
| 04/03/2012 | Mann | Very bright orange fluorescent plant: endoplasmic reticulum targeting of orange fluorescent proteins as visual reporters in transgenic plants View Document |
BMC Biotechnology | Mann, D.G.J., Abercrombie, L.L., Rudis, M.R., Milwood, R.J., Dunlap, J.R., Stewart, C.N., Very bright orange fluorescent plants: endoplasmic reticulum targeting of orange fluorescent proteins as visual reporters in transgenic plants, BMC Biotechnology, 12:17, 2012. | Research Area: Biomass Formation and Modification | 10.1186/1472-6750-12-17 |
| 06/26/2012 | Mao | The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces View Document |
Nucleic Acids Research | Mao, X, Zhang, H., Yin, Y., Xu, X., The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces, Nucleic Acids Research, 1-9, 2012. | Research Area: Characterization and Modeling | 10.1093/nar/gks605 |
| 02/15/2013 | Mao | Barcode Server: A visualization-based genome analysis system View Document |
PLoS ONE | Mao, F., Olman, V., Wang, Y., Xu, Y., Barcode Server: A visualization-based genome analysis system, PLoS ONE, 8(2): e56726, 2013. | Research Area: Characterization and Modeling | 10.1371/ journal.pone.0056726 |
| 12/07/2012 | Mao | CINPER: An interactive web system for pathway predition for prokaryotes View Document |
PLOSOne | Mao, Z., Chen, X., Zhang, Y., Pangle, S., Xu, Y., CINPER: an interactive web system for pathway prediction for prokaryotes, PLOS One, 7(12); e51252, 2012. | Research Area: Characterization and Modeling | 10.1371/journal.pone.0051252 |
| 07/22/2011 | Mao | SEAS: A system for SEED-Based Pathway Enrichment Analysis View Document |
PloS One | Mao, X., Zhang, Y., Xu, Y., SEAS: A system for SEED-Based Pathway Enrichment Analysis, Plos One, 6 (7), e22556, 2011. | Research Area: Characterization and Modeling | 10.1371/journal.pone.0022556 |
| 09/01/2009 | Mao | pDAWG: an Integrated Database for Plant Cell-Wall Genes View Document |
BioEnergy Research | Fenglou Mao, Yanbin Yan, Fengfeng Zhou, Wen-Chi Chou, Chan Zhou, Huiling Chen and Ying Xu, pDAWG: an Integrated Database for Plant Cell-Wall Genes, Bioenergy Research, Volume 2, Number 4 / December, 2009 | Research Area: Characterization and Modeling | 10.1007/s12155-009-9052-z |
| 10/06/2008 | Mao | DOOR: a database for prokaryotic operons View Document |
Nucleic Acids Research | Mao, Fenglou, Phuongan Dam, Jacky Chou, Victor Olman, and Ying Xu , DOOR: a database for prokaryotic operons, 37, Nucleic Acids Research, Database Issue 37, D459-D463, 2009. | Research Area: Characterization and Modeling | 10.1093/nar/gkn757 |
| 03/19/2013 | Martin del Campo | High-Yield Production of Dihydrogen from Xylose by Using a Synthetic Enzyme Cascade in a Cell-Free System View Document |
Angewandte Chemie | Martin del Camp, J.S., Rollin, J., Myung, S., Chun, Y., Chandrayan, S., Patino, R., Adams, M.W.W., Zhang, Y.H., High-yield production of dihydrogen from xylose by using a synthetic enzyme cascade in a cell-free system, Angewandte Chemie, 52, 1-5, 2013. | Research Area: Biomass Deconstruction and Conversion | 10.1002/anie.201300766 |
| 01/01/2009 | Mazarei | Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L. View Document |
Biotechnology Journal | Mazarei, Mitra, Al-Ahmad, Hani, Rudis, Mary R., Stewart, Jr., C. Neal, Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L., Biotechnology Journal,3, 354-359, 2008. | Research Area: Biomass Formation and Modification | 10.1002/biot.200700189 |
| 05/01/2011 | Mazarei | Switchgrass (Panicum virgatum L.) cell suspension cultures: Establishment, characterization, and application View Document |
Plant Science | Mazarei, Mitra, Al-Ahmad, Hani, Rudis, Mary R., Joyce, Blake J., Stewart Jr., C. Neal, Switchgrass (Panicum virgatum L.) cell suspension cultures: Establishment, characterization, and application, Plant Science, 18(6): 712-715, 2011. | Research Area: Biomass Formation and Modification | 10.1016/j.plantsci.2010.12.010 |
| 07/01/2010 | Mazumder | Structural analysis of arabinoxylans isolated from ball milled switchgrass biomass View Document |
Carbohydrate Research | Mazumder, K., York, W.S., Structural analysis of arabinoxylans isolated from ball-milled switchgrass biomass, Carbohydrate Research, Volume 345, Issue 15, pp 2183-2193, 2010. | Research Area: Biomass Formation and Modification | 10.1016/j.carres.2010.07.034 |
| 08/01/2012 | Mazumder | Structural Characterization of the Heteroxylans from Poplar and Switchgrass | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Mazumder, K., Pena, M.J., O'Neill, M.A., York, W.S., Structural Characterization of the Heteroxylans from Poplar and Switchgrass, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;215-228, 2012. | Research Area: Biomass Formation and Modification | 10.1007/978-1-61779-956-3_19 |
| 04/24/2012 | McKee | Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains View Document |
PNAS | McKee, L.S., Pena, M.J., Rogowski, A., Jackson, A., Lewis, York, W.S., Krogh, K.B.R.M., Vikse-Nielsen, A., Skjot, M., Gilbert, H.J., Marles-Wright, J., Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains, PNAS, 109(17), 6537-6542, 2012. | Research Area: Biomass Formation and Modification | 10.1073/pnas.1117686109 |
| 08/16/2012 | Mearls | Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms View Document |
BMC Microbiology | Mearls, E.B., Izquierdo, J.A., Lynd, L.E., Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms, BMC Microbiology, 12:180, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1471-2180-12-180 |
| 03/01/2010 | Mielenz | Improving microbial robustness using systems biology View Document |
Manual of Industrial Microbiology and Biotechnology | Mielenz, J.R., Hogsett, D.A., Improving microbial robutsness using systems biology, Manual of Industrial Microbiology and Biotechnology, 3rd Edition, p. 605-620, 2010. | Research Area: Biomass Deconstruction and Conversion | ISBN 978-1-55581-512-7 |
| 12/01/2009 | Mielenz | Fermentation of soybean hulls to ethanol while preserving protein value View Document |
Bioresource Technology | Mielenz, J.R., Bardsley, J.S., Wyman, C.E., Fermentation of soybean hulls to ethanol while preserving protein value, Bioresource Technology, Jul;100(14):3532-9, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2009.02.044 |
| 06/01/2009 | Miller | The DOE BioEnergy Science Center - a U.S. Department of Energy Bioenergy Research Center View Document |
Journal of In Vitro Cellular and Developmental Biology – Plant | Keller, Martin, Miller, Russ, 2009, The DOE BioEnergy Science Center - a U.S. Department of Energy Bioenergy Research Center, In Vitro Cell Development Biology, Volume 45, Number 3 / June, 2009. | Research Area: Characterization and Modeling | |
| 06/01/2008 | Mohnen | Pectin Structure and Biosynthesis View Document |
Current Opinion Plant Biology | Mohnen, D., Pectin structure and biosysthesis, Current Opinion in Plant Biology, Vol. 11(3), 266- 277, 2008. | Research Area: Biomass Formation and Modification | 10.1016/j.pbi.2008.03.006 |
| 06/17/2011 | Mohnen | Plants Get Hyp to O-Glycosylation View Document |
Science | Mohnen, D., Tierney, Mary L., Plants Get Hyp to O-Glycosylation, Science, 332:1393-1394, 2011. | Research Area: Biomass Formation and Modification | 10.1126/science.1208641 |
| 01/01/2008 | Mohnen | Cell wall polysaccharide synthesis View Document |
Biomass Recalcitrance | Mohnen, Debra, Maor Bar-Peled, and Chris Somerville , Cell wall polysaccharide synthesis, Biomass Recalcitrance, Ed. Michael Himmel, Chapter 5, 94-187, Oxford: Blackwell Publishing, 2008. | Research Area: Biomass Formation and Modification | |
| 07/22/2010 | Moinuddin | Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMP (caffeic acid O-methyl transferase mutant Atomt1 View Document |
Organic and Biomolecular Chemistry | Moinuddin, Syed G.A., Jourdes, M., Laskas, D.D., Ki, C., Cardenas, C.L., Kim, K.W., Zhang, D., Davin, L. B., Lewis, N.G., Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMP (caffeic acid O-methyl transferase mutant Atomt1, Organic and Biomolecular Chemistry, 2010, 8, pp 3928-3946, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1039/c004817h |
| 05/29/2010 | Moon | Sustainable Use of Biotechnology for Bioenergy Feedstocks View Document |
Environmental Management | Moon, H.S., Abercrombie, J.M., Kausch, A.P., Stewart, C. Neal, Jr., Sustainable Use of Biotechnology for Bioenergy Feedstocks, Environmental Management, volume 46, issue 4, pp 531-538, 2010. | Research Area: Biomass Formation and Modification | 10.1007/s00267-010-9503-5 |
| 08/01/2008 | Moxley | Efficient Sugar Release by the Cellulose Solvent-Based Lignocellulose Fractionation Technology and Enzymatic Cellulose Hydrolysis View Document |
Journal of Agricultural and Food Chemistry | Moxley, Geoffrey, Zhiguang Zhu, and Y.-H. Percival Zhang ,Efficient Sugar Release by the Cellulose Solvent-Based Lignocellulose Fractionation Technology and Enzymatic Cellulose Hydrolysis , Journal of Agricultural and Food Chemistry, 56 (17), 7885–7890, 2008 | Research Area: Biomass Deconstruction and Conversion | 10.1021/jf801303f |
| 01/29/2013 | Muchero | Genome anchored QTLs for biomass productivity in hybrid populus grown under contrasting environments View Document |
PLOS ONE | Muchero, W., Sewell, M.M., Ranjan P., Gunter, L.E., Tschaplinski, T.J., Yin, T., Tuskan, G.A., Genome anchored QTLs for biomass productivity in hybrid populus grown under contrasting environments, PLOS ONE, 8(1): e54468, 2013. | Research Area: Biomass Formation and Modification | 10.1371/journal.pone.0014021 |
| 03/21/2011 | Myung | Ultra-stable phosphoglucose isomerase through immobilization of cellulosebinding module-tagged thermophilic enzyme on low-cost high-capacity cellulosic adsorbent View Document |
Biotechnology Progress | Myung, Suwan, Zhang, Xiao-Zhou, Zhang, Y.H. Percival, Ultra-stable phosphoglucose isomerase through immobilization of cellulose-binding module-tagged thermophilic enzyme on low-cost high-capacity cellulosic adsorbent, Biotechnology Progress, 27(4): 969-975, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1002/btpr.606 |
| 04/01/2010 | Myung | Fructose-1,6-bisphosphatase from a hyper-thermophilic bacterium Thermotoga maritime: Characterization, metabolite stability, and its implications View Document |
Process Biochemistry | Myung, S., Wang, Y. R., Zhang, Y. H. P., Fructose-1,6-bisphosphatase from a hyper-thermophilic bacterium Thermotoga maritima: Characterization, metabolite stability, and its implications, Process Biochemistry, Volume 45, Issue 12, pp 1882-1887, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.procbio.2010.03.017 |
| 02/09/2012 | Nag | Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa View Document |
Database | Nag, A., T. V. Karpinets, Chang, C.H., Bar-Peled, M., "Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa." Database Vol. 2012: Article ID bas013, 2012. | Research Area: Biomass Formation and Modification | 10.1093/database/bas013 |
| 08/16/2012 | Nageswara-Rao | Genetic diversity and structure of natural and agronomic switchgrass (Panicum virgatum L.) populations View Document |
Genetic Resources and Crop Evolution | Nageswara-Rao, M., Stewart Jr., C.N., Kwit, C., Genetic diversity and structure of natural and agronomic switchgrass (Panicum virgatum L.) populations, Genetic Resources and Crop Evolution, 60: 1057-1068, 2012. | Research Area: Biomass Formation and Modification | 10.1007/s10722-012-9903-x |
| Nageswara-Rao | Advances in biotechnology and genomics of switchgrass | Biotechnology for Biofuels | Nageswara-Rao, M., Soneji, J.R., Kwit, C., Stewart Jr., C.N., Advances in biotechnology and genomics of switchgrass, Biotechnology for Biofuels, 6:77, 2013. | Research Area: Biomass Formation and Modification | 10.1186/1754-6834-6-77 | |
| 12/01/2012 | Olson | The role of the CipA scaffoldin protein in cellulose solubilization as determined by targeted gene deletion and complementation in Clostridium thermocellum View Document |
Journal of Bacteriology | Olson, D.G., Giannone, R.J., Hettich, R.L., Lynd, L.R., The role of the CipA scaffoldin protein in cellulose solubilization as determined by targeted gene deletion and complementation in Clostridium thermocellum, Journal of Bacteriology, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1128/JB.02014-12 |
| 05/11/2012 | Olson | Computational design and characterization of a temperature-sensitive plasmid replicon for gram positive thermophiles View Document |
Journal of Biological Engineering | Olson, D., Lynd, L.R., Computational design and characterization of a temperature-sensitive plasmid replicon for gram positive thermophiles, Journal of Biological Engineering, 6:5, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-1611-6-5 |
| 05/17/2012 | Olson | Transformation of Clostridium Thermocellum by Electroporation View Document |
Methods in Enzymology | Olson, D.G., Lynd, L.R., Transformation of Clostridium Thermocellum by Electroporation, Methods in Enzymology, 510, p 317-330, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1016/B978-0-12-415931-0.00017-3 |
| 12/14/2011 | Olson | Recent progress in consolidated bioprocessing View Document |
Current Opinion in Biotechnology | Olson, D. G., J. E. McBride, et al. (2011). "Recent progress in consolidated bioprocessing." Current Opinion in Biotechnology. (published ahead of print doi:10.1016/j.copbio.2011.11.026) | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.copbio.2011.11.026 |
| 08/16/2010 | Olson | Deletion of Cel48S from Clostridium thermocellum View Document |
PNAS | Olson, Daniel G., Tripathi, Shital A., Giannone, Richard J., Lo, Jonathan, Caiazza, Nicky C., Hogsett, David A.,Hettich, Robert, Guss, Adam M., Dubrovsky, Genia, Lynd, Lee R., Deletion of Cel48S from Clostridium thermocellum, PNAS, Volume 107, Issue 41, pp 17727-17732, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1073/pnas.1003584107 |
| 11/19/2011 | Ozdemir | S-layer homology (SLH) domain proteins Csac_0678 and Csac_2722 implicated in plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus View Document |
Applied and Environmental Microbiology | Ozdemir, I., S. E. Blumer-Schuette, et al. (2012). "S-layer homology (SLH) domain proteins Csac_0678 and Csac_2722 implicated in plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus." Applied and Environmental Microbiology 78(3):768-777. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.07031-11 |
| 12/01/2010 | Park | CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database View Document |
Glycobiology | Park, Byung H., Karpinets, Tatiana V., Syey, Mustafa, H., Leuze, Michael R., Uberbacher, Edward C., CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database, Glycobiology, 20:12, 1574-1584, 2010. | Research Area: Characterization and Modeling | 10.1093/glycob/cwq106 |
| 04/04/2013 | Passian | Comments on the paper 'A comprehensive modeling and vibration analysis of AFM microcantilevers subjected to nonlinear tip-sample interaction forces' | Ultramicroscopy | Passian, A., Tetard, L., Thundat, T., Comments on the paper 'A comprehensive modeling and vibration analysis of AFM microcantilevers subjected to nonlinear tip-sample interaction forces, Ultramicroscopy, 2013 | Research Area: Characterization and Modeling | 10.1016/j.ultramic.2013.03.016 |
| 07/31/2012 | Pattathil | Changes in Cell Wall Carbohydrate Extractability Are Correlated with Reduced Recalcitrance of HCT Downregulated Alfalfa Biomass View Document |
Industrial Biotechnology | Pattathil, S., Saffold, T., Gallego-Giraldo, L., O'Neill, M., York, W.S., Dixon, R.A., Hahn, M.G., Changes in Cell Wall Carbohydrate Extractability Are Correlated with Reduced Recalcitrance of HCT Downregulated Alfalfa Biomass, Industrial Biotechnology, 8:4, 2012. | Research Area: Biomass Formation and Modification | 10.1089/ind.2012.0013 |
| 08/01/2012 | Pattathil | Immunological Approaches to Plant Cell Wall and Biomass Characterization: Glycome Profiling | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Pattathil, S., Avci, U., Miller, J.S., Hahn, M.G., Immunological Approaches to Plant Cell Wall and Biomass Characterization: Glycome Profiling, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:61-72, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_6 |
| 10/22/2009 | Patten | Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: Further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1–2 and C4H::F5H lines View Document |
Molecular BioSystems | Patten A.M., Jourdes, M., Cardenas, C.L., Laskas, D.D., Nakazawa, Y., Chung, B.Y., Franceschi, V.R., Davin, L.B., Lewis, N.G., Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: Further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1–2 and C4H::F5H lines, Molecular BioSystems, 6:3:pp 425-604, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1039/b819206e |
| 05/17/2012 | Pena | Methods for Structural Characterization of the Products of Cellulose - and Xyloglucan-Hydrolyzing Enzymes View Document |
Methods in Enzymology | Pena, Maria J., Tuomivaara, S.T., Urbanowicz, B.R., O'Neill, M.A., York, W.S., Methods for Structural Characterization of the Products of Cellulose - and Xyloglucan-hydrolyzing Enzymes, Methods in Enzymology, 510, p 121-139, 2012. | Research Area: Biomass Formation and Modification | 10.1016/B978-0-12-415931-0.00007-0 |
| 12/01/2008 | Petridis | Cellulosic ethanol: progress towards a simulation model of lignocellulosic biomass View Document |
Journal of Physics | L Petridis and J C Smith, Cellulosic ethanol: progress towards a simulation model of lingnocellulosic biomass, Journal of Physics, Conference Series, Vol. 125, pp 012055, 2008. | Research Area: Characterization and Modeling | 10.1088/1742-6596/125/1/012055 |
| 04/01/2011 | Petridis | Atomistic Simulation of Lignocellulosic Biomass and Associated Cellulosomal Protein Complexes View Document |
ACS Symposium Series - Computational Modeling in Lignocellulosic Biofuel Production | Petridis, L. and Xu, J. and Crowley, M. F. and Smith, J. C. and Cheng, X. Atomistic Simulation of Lignocellulosic Biomass and Associated Cellulosomal Protein Complexes. 2010. In book "ACS Symposium Series - Computational Modeling in Lignocellulosic Biofuel Production", (editors: Mark R. Nimlos and Michael F. Crowley), publisher ACS, Chapter 3, pp. 55-73. | Research Area: Characterization and Modeling | 10.1021/bk-2010-1052.ch003 |
| 03/12/2010 | Petridis | A Molecular Mechanics Force Field for Lignin View Document |
Journal of Computational Chemistry | Petridis, L., Smith, J.C., A Molecular Mechanics Force Field for Lignin, Journal of Computational Chemistry, 30(3), pp 457-67, 2009. | Research Area: Characterization and Modeling | |
| 10/01/2009 | Podar | Single Cell Whole Genome Amplification of Uncultivated Organisms View Document |
Uncultivated Microorganisms Microbiology Monographs | Podar, Mircea, Keller, Martin, Hugenholtz, Philip, 2009, Singel Cell Whole Genome Amplification of Uncultivated Organisms, Microbial Monogr, Series; Volume 10/2009. | Research Area: Biomass Deconstruction and Conversion | 10.1007/7171_2008_10 |
| 12/29/2010 | Podkaminer | Enzyme inactivation by ethanol and development of a kinetic model for thermophilic simultaneous saccharification and fermentation at 50°C with Thermoanaerobacterium
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Biotechnology and Bioengineering | Podkaminer, Kara K., Hogsett, David A., Shao, Xiongjun, Lynd, Lee R., Enzyme inactivation by ethanol and development of a kinetic model for thermophilic simultaneous saccharification and fermentation at 50°C with Thermoanaerobacterium saccharolyticum ALK2, Biofuels and Environmental Biotechnology, 108(6), 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.23050 |
| 06/15/2012 | Podkaminer | Ethanol and anaerobic conditions reversibly inhibit commercial cellulase activity in thermophilic simultaneous saccharification and fermentation (tSSF) View Document |
Biotechnology for Biofuels | Podkaminer, K.K., Kenealy, W.R., Herring, C.D., Hogsett, D.A., Lynd, L.R., Ethanol and anaerobic conditions reversibly inhibit commercial cellulase activity in thermophilic simultaneous saccharification and fermentation (tSSF), Biotechnology for Biofuels, 5:43, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-43 |
| 09/28/2012 | Podkaminer | Characterization of xylan utilization and discovery of a new endoxylanase in Thermoanaerobacterium saccharolyticum through targeted gene deletions View Document |
Applied and Environmental Microbiology | Podkaminer, K.K., Guss, A.M., Trajano, H.L., Hogsett, D.A., Lynd, L.R., Characterization of xylan utilization and discovery of a new endoxylanase in Thermoanaerobacterium saccharolyticum through targeted gene deletions, Applied and Environmental Microbiology, 78:8441-7, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.02130-12 |
| 12/20/2012 | Porth | Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correleations View Document |
New Phytologist | Porth, I., Klapste, J., Skyba, O., Lai, B.S.K., Geraldes, A., Muchero, W., Tuskan, G.A., Douglas, C.J., El-Kassaby, Y.A., Mansfield, S.D., Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correleations, New Phytologist, 197: 777–790, 2012. | Research Area: Biomass Formation and Modification | 10.1111/nph.12014 |
| 01/28/2013 | Pu | Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments View Document |
Biotechnology for Biofuels | Pu, Y., Hu, F., Huang, F., Davison, B.H., Ragauskas, A.J., Accessing the molecular structure basis for biomass recalcitrance furing dilute acid and hydrothermal pretreatments, Biotechnology for Biofuels, 6:15, 2013. | Research Area: Characterization and Modeling | 10.1186/1754-6834-6-15 |
| Pu | Plant biomass characterization: application of solution- and solid-state NMR spectroscopy | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Pu, Y., Hallac, B., Ragauskas, A.J., Plant biomass characterization: application of solution- and solid-state NMR spectroscopy, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 18, pp 369-387, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch18 | |
| 05/01/2011 | Pu | Application of quantitative 31P NMR in biomass lignin and biofuel precursors characterization View Document |
Energy and Environmental Science | Pu, Y., Cao, S., Ragauskas, A.J., Application of quantitative 31P NMR in biomass lignin and biofuel precursors characterization, Energy and Environmental Science, 4, pp 3154-3166, Jun 2011. | Research Area: Characterization and Modeling | 10.1039/c1ee01201k |
| 09/01/2011 | Pu | Challenges of the utilization of wood polymers: how can they be overcome? View Document |
Applied Microbiology and Biotechnology | Pu, Y., Kosa, M., Kalluri, U.C., Tuskan, G.A., Ragauskas, A.J., Challenges of the utilization of wood polymers: how can they be overcome?, Applied Microbiology and Biotechnology, 91(6): 1525-1536, 2011. | Research Area: Biomass Formation and Modification | 10.1007/s00253-011-3350-z |
| 12/01/2009 | Pu | NMR Characterization of C3H and HCT Down-regulated Alfalfa Lignin View Document |
BioEnergy Research | Yunqiao Pu, Fang Chen, Angela Ziebell, Brian H. Davison and Arthur J. Ragauskas, NMR Characterization of C3H and HCT Down-regulated Alfalfa Lignin, Bioenergy Research, Volume 2, Number 4 / December, 2009 2:198-208 | Research Area: Characterization and Modeling | 10.1007/s12155-009-9056-8 |
| Qing | Xylooligosaccharides production, quantification, and characterization in context of lignocellulosic biomass pretreatment | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Qing, Q., Li, H., Kumar, R., Wyman, C.E., Xylooligosaccharides production, quantification, and characterization in context of lignocellulosic biomass pretreatment, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 19, pp 391-410, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch19 | |
| Ragauskas | When to accept no … to yesterday's solutions View Document |
Biofuels, Bioproducts and Biorefining | Ragauskas, A.J., When to accept no … to yesterday's solutions, Biofuels, Bioproducts and Biorefining, 7(3), 2013. | Research Area: Characterization and Modeling | 10.1002/bbb.1414 | |
| 04/22/2009 | Raman | Impact of pretreated switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis View Document |
PLoS One | Raman, B., Pan, C., Hurst, G. B., Rodriguez, M., McKeown, C. K., Lankford, Samatova, N. F., Mielenz, J. R., Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis, Plos One, 4(4): e5271 (2009) | Research Area: Biomass Deconstruction and Conversion | 10.1371/journal.pone.0005271 |
| 06/14/2011 | Raman | Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose
fermentation View Document |
BMC Microbiology | Raman, B., McKeown, Catherine K., Rodriguez Jr, M., Brown, Steven D., Mielenz, Jonathan R., Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation, BMC Microbiology, 11:134, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1471-2180-11-134 |
| 01/01/2013 | Ramanna | Rationale for developing new virus vectors to analyze gene function in grasses through virus-induced gene silencing | Methods and Protocols Series; Methods in Molecular Biology, Volume 975 | Ramanna, H., Ding, X.S., Nelson, R.S., Rationale for developing new virus vectors to analyze gene function in grasses through virus-induced gene silencing, Methods in Molecular Biology, 975, 15-32, 2013. | Research Area: Biomass Formation and Modification | 10.1007/978-1-62703-278-0_2. |
| 11/01/2009 | Ranjan | Bioinformatics-Based Identification of Candidate Genes from QTLs Associated with Cell Wall Traits in Populus View Document |
BioEnergy Research | Ranjan P, Yin T, Zhang X, Kalluri U.C, Yang X, Jawdy S, Tuskan G A, Bioinformatics‐based identification of candidate genes from QTLs associated with cell wall traits in Populus, BioEnergy Research,3;2, pp 172-182, 2009. | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9060-z |
| 04/08/2013 | Resch | Fungal cellulases and complexed cellulosomal enzymes exhibit synergistic mechanisms in cellulose deconstruction | Energy and Environmental Science | Resch, M.G., Donohoe, B.S., Baker, J.O., Decker, S.R., Bayer, E.A., Beckham, G.T., Himmel, M.E., Fungal cellulases and complexed cellulosomal enzymes exhibit synergistic mechanisms in cellulose deconstruction, Energy and Environmental Science, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1039/C3EE00019B |
| 10/05/2011 | Rodgers-Melnick | Contrasting Patterns of Evolution Following Whole Genome versus Tandem Duplication Events in Populus View Document |
Genome Research | Rodgers-Melnick, E., Mane, S.P., Dharmawardhana, P., Slavov, G.T., Crasta, O.R., Strauss, S.H., Brunner, A.M., DiFazio, S.P. (2011) "Contrasting Patterns of Evolution Following Whole Genome versus Tandem Duplication Events in Populus," Genome Research, 22:95-105. | Research Area: Biomass Formation and Modification | 10.1101/gr.125146.111 |
| 08/30/2010 | Rollin | Increasing cellulose accessibility is more important than removing lignin: A comparison of cellulose solvent-based lignocellulose fractionation and soaking in aqueous ammonia View Document |
Biotechnology and Bioengineering | Rollin, J. A., Zhu, Z. G., Sathitsuksanoh, N., Zhang, Y. H. P., Increasing Cellulose Accessibility Is More Important Than Removing Lignin: A Comparison of Cellulose Solvent-Based Lignocellulose Fractionation and Soaking in Aqueous Ammonia, Biotechnology and Bioengineering, Volume 108, Issue 1, pp 22-30, 2011 | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22919 |
| 06/29/2010 | Saar | Label-free, real-time monitoring of biomass processing with stimulated Raman scattering microscopy View Document |
Angewandte Chemie | Saar, B.G., Zeng, Y., Freudiger, C.W., Liu, Y.S., Himmel, M.E., Xie, S.X., Ding, S.Y., Label-free, real-time monitoring of biomass processing with stimulated Raman scattering microscopy, Angewandte Chemie, Volume 49, Issue 32, pp 5476-5479, 2011. | Research Area: Characterization and Modeling | 10.1002/ange.201000900 |
| 04/09/2013 | Saha | Self-rescue of an EXTENSIN mutant reveals alternative gene expression programs and candidate proteins for new cell wall assembly in Arabidopsis | The Plant Journal | Saha, P., Ray, T., Tang, Y., Dutta, I., Evangelous, N.R., Kieliszewski, M.J., Chen, Y., Cannon, M.C., Self-rescue of an EXTENSIN mutant reveals alternative gene expression programs and candidate proteins for new cell wall assembly in Arabidopsis, The Plant Journal, 2013 | Research Area: Biomass Formation and Modification | 10.111/tpj.12204 |
| 10/12/2010 | Saharay | Catalytic Mechanism of Cellulose Degradation by a Cellobiohydrolase, CelS View Document |
PloS One | Saharay, M., Guo, H., Smith, J.C., Catalytic Mechanism of Cellulose Degradation by a Cellobiohydrolase, CelS, Plos One, 5(10), e12947, 2010. | Research Area: Characterization and Modeling | 10.1371/ journal.pone.0012947 |
| 04/11/2011 | Samuel | HSQC (heteronuclear single quantum coherence) 13C–1H correlation spectra of whole biomass in perdeuterated pyridinium chloride–DMSO system: An
effective tool for evaluating pretreatment View Document |
Fuel | Samuel, R., Foston, M., Jaing, N., Cao, S., Allison, L., Studer, M., Wyman, C., Ragauskas, A.J., HSQC (heteronuclear single quantum coherence) 13C–1H correlation spectra of whole biomass in perdeuterated pyridinium chloride–DMSO system: An effective tool for evaluating pretreatment, Fuel, 90(9): 2836-2842, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.fuel.2011.04.021 |
| 08/25/2011 | Samuel | Structural Changes in switchgrass lignin and hemicelluloses during pretreatments by NMR analysis View Document |
Polymer Degradation and Stability | Samuel, R., Foston, M., Jiang, N., Allison, L., Ragauskas, A.J., Structural Changes in Switchgrass Lignin and Hemicelluloses during Pretreatments by NMR Analysis Polymer Degradation and Stability, Polymer Degradation and Stability, 96(11):2002-2009, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.polymdegradstab.2011.08.015 |
| 08/24/2009 | Samuel | Structural characterization and comparison of switchgrass ball milled lignin before and after dilute acid pretreatment View Document |
Applied Biochemistry and Biotechnology | Samuel,R., Pu, Y., Babu, R., Ragauskas, A.J.Structural Characterizations and comparison of switchgrass lignin before and after dilute acid pretreatment A. Applied Biochemistry and Biotechnology, 162 (1), 62-74, 2010. | Research Area: Characterization and Modeling | 10.1007/s12010-009-8749-y |
| 01/01/2010 | Samuel | Solid-state NMR characterization of switchgrass cellulose after dilute acid pretreatment View Document |
Biofuels | Samuel, R., Pu, Y., Foston, M., Ragauskas, A.J., Solid-state NMR characterization of switchgrass cellulose after dilute acid pretreatment, Biofuels, 1:1, pp 89-90, 2010. | Research Area: Characterization and Modeling | 10.4155/bfs.09.17 |
| 02/04/2013 | Samuel | Investigation of the fate of poplar lignin during autohydrolysis pretreatment to understand the biomass recalcitrance View Document |
RCS Advances | Samuel, R., Cao, S., Das, B.K., Hu, F., Pu, Y., Ragauskas, A.J., Investigation of the fate of poplar lignin during autohydrolysis pretreatment to understand the biomass recalcitrance, RCS Adv., , 3 (16), 5305 - 5309, 2013. | Research Area: Characterization and Modeling | 10.1039/C3RA40578H |
| 12/30/2011 | Sangha | Molecular simulation as a tool for studying lignin View Document |
Environmental Progress and Sustainable Energy | Sangha, A. K., L. Petridis, et al. (2012). Molecular simulation as a tool for studying lignin. Environmental Progress and Sustainable Energy 31(1): 47-54. | Research Area: Characterization and Modeling | 10.1002/ep.10628 |
| 04/04/2012 | Sangha | Radical Coupling Reactions in Lignin Synthesis: A DFT study View Document |
The Journal of Physical Chemistry B | Sangha, A.K., Parks, J.M., Standaert, R.F., Ziebell, A., Davis, M.F., Smith, J.C., Radical Coupling Reactions in Lignin Synthesis: A DFT study, The Journal of Physical Chemistry B, 2012 | Research Area: Characterization and Modeling | 10.1021/jp2122449 |
| 12/01/2011 | Sannigrahi | Characterization of Fermentation Residues from the Production of Bio-Ethanol from Lignocellulosic Feedstocks View Document |
Journal of Biobased Materials and Bioenergy | Sannigrahi, P. and A. J. Ragauskas (2011). "Characterization of Fermentation Residues from the Production of Bio-Ethanol from Lignocellulosic Feedstocks." Journal of Biobased Materials and Bioenergy 5(4): 514-519. | Research Area: Characterization and Modeling | 10.1166/jbmb.2011.1170 |
| Sannigrahi | Fundamentals of biomass pretreatment by fractionation | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Sannigrahi, P., Ragauskas, A.J., Fundamentals of biomass pretreatment by fractionation, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 10, pp 201-219, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch10 | |
| 12/01/2010 | Sannigrahi | Pseudo-lignin and pretreatment chemistry View Document |
Energy and Environmental Science | Sannigrahi, P., Kim, Dong Ho., Seokwon, Jung, Ragauskas, Arthur, Pseudo-lignin and pretreatment chemistry, Energy and Environmental Science, 4:4:1306-1310, 2011. | Research Area: Characterization and Modeling | 10.1039/c0ee00378f |
| 03/01/2010 | Sannigrahi | Poplar as a feedstock for biofuels: A review of compositional characteristics View Document |
Biofuels, Bioproducts and Biorefining (Biofpr) | Sannigrahi, P., Ragauskas, A.J., Tuskan, G.A., Poplar as a feedstock for biofuels: A review of compositional characteristics, Biofuels Bioproducts and Biorefining-Biofpr, Volume 4, Issue2, pp 209-226 2010. | Research Area: Biomass Formation and Modification | 10.1002/bbb.206 |
| 11/12/2010 | Sathisuksanoh | Cellulose solvent-based pretreatment breaks highly ordered hydrogen bonds in cellulose fibers of switchgrass View Document |
Biotechnology and Bioengineering | Sathitsuksanoh, Noppadon, Zhu, Zhiguang, Wi, Sungsool, Zhang, Y.H-P, Cellulose Solvent-Based Biomass Pretreatment Breaks Highly Ordered Hydrogen Bonds in Cellulose Fibers of Switchgrass, Biotechnology and Bioengineering, 2011;108: 521-529, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22964 |
| 09/25/2009 | Sathitsuksanoh | Bamboo saccharification through cellulose solvent-based biomass pretreatment followed by enzymatic hydrolysis at ultra-low cellulase loadings View Document |
Bioresource Technology | Sathitsuksanoh N, Zhu ZG, Ho T-J, Bai M-D, Zhang Y-HP,Bamboo saccharification through cellulose solvent-based biomass pretreatment followed by enzymatic hydrolysis at ultra-low cellulase loadings Volume 101, Issue 13, July 2010, Pages 4926-4929, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2009.09.081 |
| 05/28/2009 | Sathitsuksanoh | Saccharification of a potential bioenergy crop, Phragmites australis (common reed), by lignocellulose fractionation followed by enzymatic hydrolysis at decreased cellulase loadings View Document |
Industrial and Engineering Chemistry Research | Sathitsuksanoh, N., Zhu, Z. G., Templeton, N., Rollin, J. A., Harvey, S. P., Zhang, Y. H. P., Saccharification of a Potential Bioenergy Crop, Phragmites australis (Common Reed), by Lignocellulose Fractionation Followed by Enzymatic Hydrolysis at Decreased Cellulase Loadings, Industrial and Engineering Chemistry Research, Volume 48; Issue 13; pp 6441-6447; July 1, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1021/ie900291s |
| 11/30/2012 | Sathitsuksanoh | New lignocellulose pretreatments using cellulose solvents: a review View Document |
Journal of Chemical Technology and Biotechnology | Sathitsuksanoh, N., George, A., Zhang, Y-H P., New lignocellulose pretreatments using cellulose solvents: a review, Journal of Chemical Technology and Biotechnology, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1002/jctb.3959 |
| 04/01/2012 | Sathitsuksanoh | Cellulose solvent-based pretreatment for corn stove rand avicel: concentrated phosphoric acid versus ionic liquid [BMIM]C1 View Document |
Cellulose | Sathitsuksanoh, N., Zhu, Z., Zhang, Y.H.P., Cellulose solvent-based pretreatment for corn stove rand avicel: concentrated phosphoric acid versus ionic liquid [BMIM]C1, Cellulose, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s10570-012-9719-z |
| 04/21/2012 | Sathitsuksanoh | Cellulose solvent - and organic solvent-based lignocellulose fractionation enabled efficient sugar release from a variety of lignocellulosic feedstocks View Document |
Bioresource Technology | Sathitsuksanoh, N., Zhu, Z., Zhang, Y-H.P., Cellulose solvent - and organic solvent-based lignocellulose fractionation enabled efficient sugar release from a variety of lignocellulosic feedstocks, Bioresource Technology, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biotech.2012.04.088 |
| 10/01/2009 | Schulz | Scaling of Multimillion-Atom Biological Molecular Dynamics Simulation on a Petascale Supercomputer View Document |
Journal of Chemical Theory and Computation | Roland Schulz, Benjamin Lindner, Loukas Petridis, and Jeremy C. Smith, Scaling of Multimillion-Atom Biological Molecular Dynamics Simulation on a Petascale Supercomputer, Journal of Chemical Theory and Computation2009, 5, 2798-2808, 2009. | Research Area: Characterization and Modeling | 10.1021/cr900292r |
| 04/01/2010 | Selig | Lignocellulose recalcitrance screening by integrated high- throughput hydrothermal pretreatment and enzymatic View Document |
Industrial Biotechnology | Selig, Michael J., Tucker, Melvin P., Sykes, R., Reichel, D., Brunecky, R., Himmel, M.E., Davis, M.F., Decker, S.R., Biomass Recalcitrance Screening by Integrated High Throughput Hydrothermal Pretreatment and Enzymatic Saccharification, Industrial Biotechnology , Volume 6 (2) Apr 1, 2010. | Research Area: Biomass Deconstruction and Conversion | |
| 02/02/2011 | Selig | High-Throughput Determination of Glucan and Xylan Fractions in Lignocelluloses View Document |
Biotechnology Letters | Selig, Michael J., Tucker, Melvin P., Law, Cody, Doeppke, Crissa, Himmel, Michael E., Decker, Stephen R., High throughput determination of glucan and xylan fractions in lignocelluloses, Biotechnology Letters, 33(5): 961-975, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s10529-011-0526-7 |
| 03/24/2013 | Serba | Linkage maps of lowland and upland tetraploid switchgrass ecotypes View Document |
Bioenergy Research | Serba, D., Wu, L., Daverdin, G., Bahri, B.A., Wang, X., Kilian, A., Bouton, J.H., Brummer, E.C., Saha, M.C., Devos, K.M., Linkage maps of lowland and upland tetraploid switchgrass ecotypes, Bioenergy Research, 2013 | Research Area: Biomass Formation and Modification | 10.1007/s12155-013-9315-6 |
| 12/10/2012 | Shao | Kinetic modeling of xylan hydrolysis in co- and countercurrent liquid hot water flow-through pretreatments | Bioresource Technology | Shao, X., Lynd, L., Kinetic modeling of xylan hydrolysis in co- and countercurrent liquid hot water flow-through pretreatments, Bioresource Technology, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2012.11.109 |
| 06/01/2011 | Shao | Conversion for Avicel and AFEX pretreated corn stover by Clostridium thermocellum and simultaneous saccharification and fermentation: Insights into microbial conversion of pretreated cellulosic biomass View Document |
Bioresource Technology | Shao, X., Jin, M., Guseva, A., Liu, C., Balan, V., Hogsett, D., Dale, B.E., Lynd, L, Conversion for Avicel and AFEX pretreated corn stover by Clostridium thermocellum and simultaneous saccharification and fermentation: Insights into microbial conversion of pretreated cellulosic biomass, Bioresource Technology, 102(17): 8040-8045, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2011.05.021 |
| 08/27/2011 | Shao | Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum View Document |
Applied Microbiology and Biotechnology | Shao, X., Raman, B., Zhu, M., Mielenz, J.R., Brown, S.D., Guss, A.M., Lynd, L.R., Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum, Applied Microbiology and Biotechnology, 92(3):641-652, 2011 | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00253-011-3492-z |
| 05/01/2010 | Shaw | Natural Competence in Thermoanaerobacter and Thermoanaerobacterium Species View Document |
Applied and Environmental Microbiology | Shaw, A., Joe, Hogsett, David A., Lynd, Lee R., Natural Competence in Thermoanaerobacter and Thermoanaerobacterium Species, Applied and Environmental Microbiology, Volume 76, Issue 14, pp 4713-4719, July 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.00402-10 |
| 10/20/2009 | Shen | Developmental control of lignification in stems of lowland switchgrass variety Alamo and the effects on saccharification efficiency View Document |
BioEnergy Research | Shen H, Fu C, Xiao X, Ray T, Tang Y, Wang Z. and Chen F. (2009) Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency. Bioenerg. Res. 2:233–245, Volume 2, Number 4 / December, 2009, pp 233-245 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9058-6 |
| 10/11/2011 | Shen | Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks View Document |
New Phytologist | Shen, H., He, X., Poovaiah, C.R., Wuddineh, W.A., Ma, J., Mann, D.G.J., Abercrombie, L.A., Wang, H., Jackson, L., Tang, Y., Stewart, C.N. Jr., Chen, F. and Dixon, R.A, Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks, New Phytologist, 2012 Jan;193(1):121-36. | Research Area: Biomass Formation and Modification | 10.1111/j.1469-8137.2011.03922 |
| 10/16/2009 | Shen | A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production BER-120R1 View Document |
BioEnergy Research | Shen H, Yin Y, Chen F, Xu Y and Dixon RA (2010) A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production. Bioenergy Research, Volume 2, Number 4 / December, 2009, pp 217-232 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9047-9 |
| Shen | Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production | Biotechnology for Biofuels | Shen, H., Pooviah, C.R., Ziebell, A., Tschaplinski, T.J., Pattathil, S., Gjersing, E., Engle, N.L., Katahira, R., Pu, Y., Sykes, R., Chen, F., Ragauskas, A.J., Mielenz, J.R., Hahn, M.G., Davis, M., Stewart, Jr., N., Dixon, R.A., Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production, Biotechnology for Biofuels, 5:71, 2013. | Research Area: Biomass Formation and Modification | 10.1186/1754-6834-6-71 | |
| 02/11/2011 | Sizova | Cellulose and Xylan-Degrading Thermophilic Anaerobic Bacteria from Biocompost View Document |
Applied and Environmental Microbiology | Sizova, M. V., Izquierdo, J. A., Panikow, N. S., Lynd, L. R., Thermophilic A naerobic Bacteria from Biocompost Able to Degrade Cellulose and Xylan, Applied and Environmental Microbiology, 77(7): 2282-2291, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.01219-10 |
| 01/01/2010 | Slavov | Salient Biological Features, Systematics, and Genetic Variation of Populus View Document |
Genetics and Genomics of Populus | Slavov, G.T., Zhelev, P., Salient Biological Features, Systematics, and Genetic Variation of Populus, Genetics and Genomics of Populus, 8, 2010. | Research Area: Biomass Formation and Modification | 10.1007/978-1-4419-1541-2_2 |
| 05/05/2010 | Slavov | Population substructure in continuous and fragmented stands of Populus trichocarpa View Document |
Heredity | Slavov, G.T., Leonardi, S., Adams, W.T., Strauss, S.H., DiFazio, S.P., Population substructure in continuous and fragmented stands of Populus trichocarpa, Heredity, 1-10, 2010. | Research Area: Biomass Formation and Modification | |
| 01/01/2009 | Slavov | Extensive pollen flow in two ecologically contrasting populations of Populus trichocarpa View Document |
Molecular Ecology | Slavov, G.T., Leonardi, S., Burczyk, J., Adams, W.T., Strauss, S.H., Difazio, S.P., Extensive pollen flow in two ecologically contrasting populations of Populus trichocarpa, Molecular Ecology, 18(2): pp 357-373, 2009. | Research Area: Biomass Formation and Modification | 10.1111/j.1365-294X.2008.04016.x |
| 08/01/2012 | Slavov | Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa View Document |
New Phytologist | Slavov, G.T., DiFazio, S.P., Martin, J., Schackwitz, W., Muchero, W., Rodgers-Melnick, E., Lipphardt, M.F., Pennacchio, C.P., Hellsten, U., Pennacchio, L.A., Gunter, L.W., Ranjan, P., Vining, K., Pomraning, K.R., Wilhelm, L.J., Pellegrini, M., Mockler, T.C., Freitag, M., Geraldes, Ar., El-Kassaby, Y.A., Mansfield, S.D., Crong, Q.C.B., Douglas, C.J., Strauss, S.H., Rokhsar, D., Tuskan, G.A., Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa, New Phytologist, 196(3):713–725, 2012. | Research Area: Biomass Formation and Modification | 10.1111/j.1469-8137.2012.04258 |
| 12/01/2009 | Smith | Supercomputers Tackle BIOFUEL Production Problems View Document |
SciDAC Review | Jeremy C. Smith, Mark Nimlos, Mike Himmel, Mike Crowley, John Brady, Supercomputers Tackle BIOFUEL Production Problems, SciDAC, 2009. | Research Area: Biomass Deconstruction and Conversion | |
| 03/01/2011 | Srivastava | The plastidial folylpolyglutamate synthetase and root apical meristem maintenance View Document |
Plant Signaling and Behavior | Srivastava, Avinach C., Tang, Yuhong, Diaz de la Garza, Rocio I., Blancaflor, Elison B., The plastidial folylpolyglutamate synthetase and root apical meristem maintenance, Plant Signaling and Behavior, 155(3): 1237-1251, 2011. | Research Area: Biomass Formation and Modification | 10.1104/pp.110.168278 |
| 01/13/2011 | Srivastava | The Folylpolyglutamate Synthetase Plastidial Isoform is Required for
Postembryonic Root Development in Arabidopsis View Document |
Plant Physiology | Srivastava, Avinash C., Ramos-Parra, Perla A., Bedair, Mohamed, Robledo-Hernández, Ana L., Tang, Yuhong, Sumner, Lloyd W., Díaz de la Garza, Rocío I., Blancaflor, Elison B., The Folylpolyglutamate Synthetase Plastidial Isoform is Required for Postembryonic Root Development in Arabidopsis, Plant Physiology, Plant Physiology 155 (3):1237-1251, 2011. | Research Area: Biomass Formation and Modification | 10.1104/pp.110.168278 |
| 05/01/2011 | Srivastava | Collection and analysis of expressed sequence tags derived from laser capture microdissected switchgrass (Panicum virgatum L. Alamo) vascular tissues View Document |
BioEnergy Research | Srivastava, A.C., Palanichelvam, K., Ma, J.Y., Steele, J., Blancaflor, E.B., Tang, Y.H., Ceollection and Analysis of Expressed Sequence Tage Derived from Laser Capture Microdissected Switchgrass (Panicum virgatum L. Alamo) Vascular Tissues, BioEnergy Research, 3;3, pp 278-294, 2010. | Research Area: Biomass Formation and Modification | 10.1007/s12155-010-9080-8 |
| 01/01/2010 | Stewart | China-U.S. Workshop on Biotechnology of Bioenergy Plants View Document |
Ecotoxicology | Stewar, C. Neal, Jr., Shugart, Lee, Liu, Gong-She, Zhuang, Jie, Ma Yongqing, Tuskan, Gerald A., Meilan, Richard, Gentry, Randall W., Sayler, Gary S., China-U.S. Workshop on Biotechnology of bioenergy plants, Exotoxicology, Volume 19, Number 1 / January 2010. | Research Area: Biomass Formation and Modification | 10.1007/s10646-009-0448-5 |
| 09/05/2011 | Stewart | Bioenergy plants in the United States and China View Document |
Plant Science | Stewart Jr., C. N., Liu, G.S., Bioenergy plants in the United States and China, Plant Science, 181:6, pp 621-622, 2011. | Research Area: Biomass Formation and Modification | 10.1016/j.plantsci.2011.09.001 |
| 07/12/2011 | Studer | Co-hydrolysis of hydrothermal and dilute acid pretreated Populus slurries to support development of a high-throughput pretreatment system View Document |
Biotechnology for Biofuels | Studer, M.H., Brethauer, S., DeMartini, J.D., McKenzie, H.L., Wyman, C.E., Co-hydrolysis of hydrothermal and dilute acid pretreated Populus slurries to support development of a high-throughput pretreatment system, Biotechnology for Biofuels, 2011, 4:19. | Research Area: Characterization and Modeling | 10.1186/1754-6834-4-19 |
| 02/01/2010 | Studer | Engineering of a High-Throughput Screening System to Identify Cellulosic Biomass, Pretreatments, and Enzyme Formulations that Enhance Sugar Release. View Document |
Biotechnology and Bioengineering | Studer, M.H., DeMartini, J.D., Brethauer, S., McKenzie, H.L., Wyman, C.E., Engineering of a High-Throughput Screening System to Identify Cellulosic Biomass, Pretreatments, and Enzyme Formulations That Enhance Sugar Release, Biotechnology and Bioenginjeering, Volume 105, Issue 2, pp 231-238, 2010. | Research Area: Characterization and Modeling | 10.1002/bit.22527 |
| 03/01/2011 | Studer | Lignin content in natural Populus variants affects sugar release View Document |
PNAS | Studer, Michael E., DeMartini, Jaclyn D., Davis, Mark F., Sykes, Robert W., Davison, Brian H., Keller, Martin, Tuskan, Gerald A., Wyman, Charles E., Lignin content in natural Populus variants affects sugar release, PNAS, 108(15): 6300-6305, 2011. | Research Area: Characterization and Modeling | 10.1073/pnas.1009252108 |
| 05/01/2011 | Sukharnikov | Cellulases: ambiguous nonhomologous enzymes in a genomic perspective View Document |
Trends in Biotechnology | Sukharnikov, Leonid O., Cantwell, Brian J., Podar, Mircea, Zhulin, Igor B., Cellulases: ambiguous nonhomologous enzymes in a genomic perspective, Trends in Biotechnology, 29(10): 473-479, 2011. | Research Area: Characterization and Modeling | 10.1016/j.tibtech.2011.04.008 |
| 10/10/2012 | Sukharnikov | Sequence, Structure, and Evolution of cellulases in the glycoside Hydrolase Family 48 View Document |
The Journal of Biological Chemistry | Sukharnikov, L, Alahuhta, M., Brunecky, R., Upadhyay, A., Himmel, M., Lunin, Zhulin, I, Sequence , Structure, and Evolution of Cellulases in the Glycoside Hydrolase Family 48, The Journal of Biological Chenistry, 2012 | Research Area: Characterization and Modeling | 10.1074/jbc.M112.405720 jbc.M112.405720 |
| 02/08/2012 | Sun | Thermophilic Thermotoga maritima ribose-5 phosphate isomerase RpiB: Optimized heat treatment purification and basic characterization View Document |
Protein Expression and Purification | Sun, F., Zhang, X.Z., Myung, S., Zhang, Y.-H.P, Thermophilic Thermotoga maritima ribose-5 phosphate isomerase RpiB: Optimized heat treatment purification and basic characterization, Protein Expression and Purification, 2012 Feb 8;82(2):302-307. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.pep.2012.01.017 |
| 03/28/2012 | Sun | MicroRNA Expression Analysis in the Cellulosic Biofuel Crop Switchgrass (Panicum virgatum) under Abiotic Stress View Document |
PLoS One | Sun, G., C. N. Stewart, Jr., et al. (2012). "MicroRNA Expression Analysis in the Cellulosic Biofuel Crop Switchgrass (Panicum virgatum) under Abiotic Stress." PLoS ONE 7(3): e32017. | Research Area: Biomass Formation and Modification | 10.1371/journal.pone.0032017 |
| 01/11/2012 | Syed | BESC knowledgebase public portal View Document |
Bioinformatics | Syed, M.H., Karpinets, T.V., Parang, M., Leuze, M.R., Park, B.H., Hyatt, D., Brown, S.D., Moulton, S., Galloway, M.D., Uberbacher, E.C., BESC knowledgebase public portal, Bioinformatics., volume 28, number 5, pp 750-751, 2012. | Research Area: Characterization and Modeling | 10.1093/bioinformatics/bts016 |
| 12/01/2008 | Sykes | Within tree variability of lignin composition in Populus View Document |
Wood Science and Technology | Sykes, Robert, Bob Kodrzycki, Gerald Tuskan, Kirk Foutz and Mark Davis , Within tree variability of lignin composition in Populus, Wood Science and Technology, 17 June 2008 epub | Research Area: Biomass Formation and Modification | |
| 09/18/2009 | Sykes | High Throughput Screening of Plant Cell Wall Composition Using Pyrolysis Molecular Beam Mass Spectroscopy View Document |
Biofuels: Methods and Protocols | Sykes, R., Yung, M., Novaes, E., Kirst, M., Peter, G., Davis, M., High Throughput Screening of Plant Cell Wall Composition Using Pyrolysis Molecular Beam Mass Spectroscopy, Biofuels, Methods and Protocols Series: , Vol. 581, pp 169-183, Mielenz, Jonathan R. (Ed.) 2009. | Research Area: Characterization and Modeling | 10.1007/978-1-60761-214-8_12 |
| 01/01/2013 | Tan | An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein View Document |
The Plant Cell | Tan, L., Eberhard, S., Pattathil, S., Warder, C., Glushka, J., Yuan, C., Hao, Z., Zhu, X., Avci, U., Miller, J.S., Baldwin, D., Pham, C., Orlando, R., Darvill, A., Hahn, M.G., Kieliszewski, M.J., Mohnen, D., An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein, The Plant Cell, 25(1):270-287, 2012. | Research Area: Biomass Formation and Modification | |
| 09/05/2011 | Tetard | Nanometrology of delignified Populus using mode synthesizing atomic force microscopy View Document |
Nanotechnology | Tetard, L., Passian, A., Farahi, R.H., Davison, B.H., Jung, S., Ragauskas, A.J., Lereu, A.L., Thundat, T. (2011) "Nanometrology of delignified Populus using mode synthesizing atomic force microscopy." Nanotechnology 22:465702 . | Research Area: Characterization and Modeling | 10.1088/0957-4484/22/46/465702 |
| 10/21/2011 | Tetard | Optical and plasmonic spectroscopy with cantilever shaped materials View Document |
Journal of Physics D: Applied Physics | Tetard, L., Passian, A., Farahi, R.H., Davison, B.H., Lereu, A.L., Thundat, T. (2011) "Optical and plasmonic spectroscopy with cantilever shaped materials." Journal of Physics D: Applied Physics 44:445102. | Research Area: Characterization and Modeling | 10.1088/0022-3727/44/44/445102 |
| 05/06/2011 | Tetard | Virtual Resonance and Frequency Difference Generation by van der Waals Interaction View Document |
Physical Review Letters | Tetard, L., Passian, A., Eslami, S., Jalili, N., Farahi, R.H., Thundat, T., Virtual Resonance and Frequency Difference Generation by van der Waals Interaction, Physical Review Letters, 106(18): 180801, 2011. | Research Area: Characterization and Modeling | 10.1103/PhysRevLett.106.180801 |
| 08/01/2012 | Tetard | Development of New Methods in Scanning Probe Microscopy
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Industrial Biotechnology | Tetard, L., Passian, A., Jung, S., Ragauskas, A.J., Davison, B.H., Development of New Methods in Scanning Probe Microscopy for Lignocellulosic Biomass Characterization, Industrial Biotechnology, 8;4, 2012. | Research Area: Characterization and Modeling | 10.1089/ind.2012.0017 |
| 12/20/2009 | Tetard | New modes for subsurface atomic force microscopy through nanomechanical coupling View Document |
Nature Nanotechnology | Tetard, L., Passian, A., Thundat, T., New modes for subsurface atomic force microscopy through nanomechanical coupling, Nature Nanotechnology, 20 December 2009 | Research Area: Characterization and Modeling | doi:10.1038/nnano.2009.454 |
| 09/01/2011 | Tetard | Optomechanical spectroscopy with broadband interferometric and quantum cascade laser sources View Document |
Optics Letters | Tetard, L., Passian, A., Farahi, R. H., Davison, B.H., Thundat, T., Optomechanical spectroscopy with broadband interferometric and quantum cascade laser sources, Optics Letters, Vol. 36, No. 17, September 1, 2011. | Research Area: Characterization and Modeling | 10.1364/OL.36.003251 |
| 06/01/2010 | Tetard | Spectroscopy and atomic force microscopy of biomass View Document |
Ultramicroscopy | Tetard, L., Passian, A., Rarahi, R.H., Kalluri, U.C., Davison, B.H., Thundat, T., Ultramicroscopy, Volume 110; Issue 6; pp 701-707sz, 2010. | Research Area: Biomass Formation and Modification | 10.1016/j.ultramic.2010.02.035 |
| 03/19/2013 | Trajano | Comparison of the effectiveness of a fluidized sand bath and a steam chamber for reactor heating View Document |
Industrial & Engineering Chemistry Research | Trajano, H.L., DeMartini, J.D., Studer, M.H., Wyman, C.E., Comparison of the effectiveness of a fluidized sand bath and a steam chamber for reactor heating, Industrial & Engineering Chemistry Research, 2013 | Research Area: Characterization and Modeling | 10.1021/ie301869a |
| Trajano (McKenzie) | Fundamentals of biomass pretreatment at Low pH | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Trajano, H.L., Wyman, C.E., Fundamentals of Biomass Pretreatment at Low pH, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 6, pp 103-123, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831.ch6 | |
| 11/15/2009 | Tran | De novo computational prediction of non-coding RNA genes in prokaryotic genomes View Document |
Bioinformatics | Tran, T.,; Zhou, F; Marshburn, S; Stead, M; Kushner, S; Xu, Ying; De novo computational prediction of non-coding RNA genes in prokaryotic genomes, Bioinformatics, Volume 25, Number 22 Pp. 2897-2905, 2009. | Research Area: Characterization and Modeling | 10.1093/bioinformatics/btp537 |
| 08/01/2010 | Tripathi | Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant View Document |
Applied and Environmental Microbiology | Tripathi, S.A., Olson, D.G., Argyros, D.A., Miller, B.B., Barrett, T.F., Murphy, D.M., McCool, JD., Warner, A.K., Rajgarhia, V.B., Lynd, L.R., Hogsett, D.A., Caiazza, N.C., Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant, Applied and Environmental Microbiology, Volume 76, Issue 19, pp 6591-6599, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.01484-10 |
| 03/01/2011 | Tsai | Poplar Genome Microarrays | Genetics, Genomics and Breeding of Crop Plants: Poplar | Tsai, C.J., Ranjan, P., DiFazio, S.P., Tuskan, G.A., Johnson, V.E., Poplar Genome Microarrays, Genetics, Genomics and Breeding of Popular, chapter 5, 112-127, 2011. | Research Area: Biomass Formation and Modification | 10.1201/b10819-6 |
| 09/28/2012 | Tschaplinski | Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog View Document |
Biotechnology for Biofuels | Tschaplinski, et. al, Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog, Biotechnology for Biofuels, 5:71, 2012. | Research Area: Characterization and Modeling | 10.1186/1754-6834-5-71 |
| 03/28/2012 | Tuskan | The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis View Document |
Tree Genetics and Genomes | Tuskan, G., S. DiFazio, et al. "The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis." Tree Genetics and Genomes. (published online ahead of print doi:10.1007/s11295-012-0495-6) | Research Area: Biomass Formation and Modification | 10.1007/s11295-012-0495-6 |
| 10/25/2010 | Tyler | Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium
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BMC Genomics | Tyler, Ludmila, Bragg, Jennifer N., Wu, Hiajie, Yang, Xiaohan, Guskan, Gerald A., Vogel, John P., Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon, BMC Genomics, 2010, 11:600. | Research Area: Biomass Formation and Modification | 10.1186/1471-2164-11-600 |
| 10/09/2009 | Ulrich | The MiST2 database: a comprehensive genomics resource on microbial signal transduction View Document |
Nucleic Acids Research | Ulrich, Luke E., Zhulin, Igor B., The MiST2 database: a comprehensive genomics resource on microbial signal transduction, Nucleic Acids Research, Volume 38, pp D401-D407 | Research Area: Characterization and Modeling | 10.1093/nar/gkp940 |
| 10/14/2012 | Uppalapati | Characterization of the Rust Fungus, Puccinia emaculata, and Evaluation of Genetic Variability for Rust Resistance in Switchgrass Populations View Document |
Bioenergy Research | Uppalapati, S.R., Serba, D.D., Ishiga, Y., Szabo, L.J., Mittal, S., Bhandari, H.S., Bouton, J.H., Mysore, K.S., Saha, M.C., Characterization of the Rust Fungus, Puccinia emaculata, and Evaluation of Genetic Variability for Rust Resistance in Switchgrass Populations, Bioenergy Research, 2012 | Research Area: Biomass Formation and Modification | 10.1007/s12155-012-9263-6 |
| 08/14/2012 | Urbanowicz | 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein View Document |
PNAS | Urbanowicz, B.R., Pena, J.J., Ratnaparkhe, S., Avci, U., Backe, J., Steet, H.F., Foston, M., Li, Hongjia, O'Neill, M.A., Ragauskas, A.J., Darvill, A.G., Wyman, C., Gilbert, H.J., York, W.S., 4-O-methylation of glucuronic acid in Arabidopsis glucuronosylan is catalyzed by a domain of unknown function family 579 protein, PNAS, 2012 | Research Area: Biomass Formation and Modification | 10.1073/pnas.1208097109 |
| 05/01/2012 | van der Lelie | The metagenome of an anaerobic microbial community decomposing poplar wood chips View Document |
PLoS One | van der Lelie, D., Taghavi, S., McCorkle, S.M., Li, L.L., Malfatti, S.A., Monteleone, D., Donohoe, B.S., Ding, S.Y., Adney, W.S., Himmel, M.E., Tringe, S.G., The metagenome of an anaerobic microbial community decomposing poplar wood chips, PLoS One, 2012. | Research Area: Biomass Deconstruction and Conversion | |
| 04/15/2013 | van der Veen | Characterization of Clostridium thermocellum strains with disrupted fermentation end product pathways View Document |
Journal of Industrial Microbiology & Biotechnology | van der Veen, D., Lo, J., Brown, S.D., Johnson, C.M., Tschaplinski, T.J., Martin,k M., Engle, N.L., van den Berg, R.A., Argyros, A.D., Caiazza, N.C., Guss, A.M., Lynd, L.R., Characterization of Clostridium thermocellum strains with disrupted fermentation end product pathways, 2013 | Research Area: Biomass Deconstruction and Conversion | |
| 12/15/2009 | VanFossen | Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences View Document |
Applied and Environmental Microbiology | Vanfossen Amy L, Verhaart Marcel R A, Kengen Serve M W, Kelly Robert M,Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences, Applied and Environmental Microbiology (2009), 75(24), 7718-24. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.01959-09 |
| 03/11/2011 | VanFossen | Glycoside Hydrolase Inventory Drives Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus View Document |
Biotechnology and Bioengineering | VanFossen, Amy L., Ozdemir, Inci, Zelin, Samantha L., Kelly, Robert M., Glycoside Hydrolase Inventory Drives Plant Polysacharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus, Biotechnology and Bioengineering, 108(7): 1559-1569, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.23093 |
| 01/01/2012 | Vishnivetskaya | Cellulolytic Microorganisms from Thermal Environments View Document |
Extremophiles: Microbiology and Biotechnology | Vishnivetskaya T.A., Raman B., Phelps T.J., Podar M., Elkins J.G. Cellulolytic Microorganisms from Thermal Environments. 2012. In book "Extremophiles: Microbiology and Biotechnology” (ed. Anitori R.), Caister Academic Press, Norfolk, UK, Chapter 7, p. 131-158. | Research Area: Biomass Deconstruction and Conversion | ISBN: 978-1-904455-98-1 |
| 07/01/2010 | Voelker | Antisense down-regulation of 4CL expression alters lignification, tree growth, and saccharification potential of field-grown poplar | Plant Physiology | Voelker, SL; Lachenbruch, B; Meinzer, FC; Jourdes, M; Ki, CY; Patten, AM; Davin, LB; Lewis, NG; Tuskan, GA; Gunter, L; Decker, SR; Selig, MJ; Sykes, R; Himmel, ME; Kitin, P; Shevchenko, O; Strauss, SH. 2010. Antisense Down‐Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field‐Grown Populas, PLANT PHYSIOLOGY 154 (2): 874‐ 886, DOI: 10.1104/pp.110.159269 | Research Area: Biomass Deconstruction and Conversion | |
| 02/11/2010 | Vogel | Genome sequencing and analysis of the model grass Brachypodium distachyon View Document |
Nature | Vogel, John P., Tuskan, G. A., Kalluri, U. C., Yang, Xiaohan, et al., Genome sequencing and analysis of the model grass Brachypodium distachyon, Nature, 463(7282):763-768 | Research Area: Biomass Formation and Modification | 10.1038/nature08747 |
| 11/01/2009 | Voit | Estimation of Metabolic Pathway Systems from Different Data Sources View Document |
IET Systems Biology | Voit E O, Goel G, Chou I-C, Fonseca L L, Estimation of Metabolic Pathway Systems from Different Data Sources, November 2009 -- Volume 3, Issue 6, p.513–522 | Research Area: Characterization and Modeling | 10.1049/iet-syb.2008.0180 |
| 08/01/2011 | Voit | What if the Fit is Unfit? Criteria for Biological Systems Estimation Beyond Residual Errors View Document |
Applied Statistics for Biological Networks | Voit, E.O.: What if the fit is unfit? Criteria for biological systems estimation beyond residual errors. In: M. Dehmer, F. Emmert-Streib and A. Salvador (Eds.): Applied Statistics for Biological Networks. J. Wiley and Sons, New York, pp. 183-200, 2011. | Research Area: Characterization and Modeling | 10.1002/9783527638079.ch9 |
| 06/01/2010 | Voit | Parameter Estimation in Canonical Biological Systems Models View Document |
International Journal of Systems Synthetic Biology | Voit, E.O., Chou I.C., Parameter Estimation in Canonical Biological Systems Models, International Journal of Systems and Synthetic Biology, Volume 1, Issue 1, pp 1-19, 2010 | Research Area: Characterization and Modeling | |
| 07/02/2010 | Vuong | Glycoside hydrolases: Catalytic base / nucleophile diversity View Document |
Biotechnology and Bioengineering | Vuong, T.V., Wilson, D.B., Glycoside hydrolases: Catalytic base / nucleophile diversity, Biotechnology and Bioengineering, Volume 107, Issue 2, pages 195-205, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22838 |
| 10/10/2012 | Waller | Exchange of Type II Dockerin-Containing Subunits of the C. thermocellum Cellulosome as revealed by SNAP-tags View Document |
FEMS Microbiology Letters | Waller, B.H., Olson, D.G., Currie, D.H., Guss, A.M., Lynd, L.R., Exchange of Type II Dockerin-Containing Subunits of the C. thermocellum Cellulosome as revealed by SNAP-tags, FEMS Microbiology Letters, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1111/1574-6968.12029 |
| 08/09/2012 | Wang | Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis View Document |
BMC Plant Biology | Wang, S., Yin, Y., Ma, Q., Tang, Xiaojia, Hao, D., Xu, Y., Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis, BMC Plant Biology, 12:138, 2012. | Research Area: Characterization and Modeling | 10.1186/1471-2229-12-138 |
| 02/07/2012 | Wang | Determination of cellulase colocalization on cellulose fiber with quantitative FRET measured by acceptor photobleaching and spectrally unmixing fluorescence microscopy View Document |
Analyst | Wang, L., Y. Wang, et al. (2012). "Determination of cellulase colocalization on cellulose fiber with quantitative FRET measured by acceptor photobleaching and spectrally unmixing fluorescence microscopy." Analyst. (published ahead of print doi:10.1039/C2AN15938D) | Research Area: Characterization and Modeling | 10.1039/C2AN15938D |
| 02/28/2012 | Wang | Is genetic engineering ever going to take off in forage, turf and bioenergy crop breeding? View Document |
Annals of Botany | Wang, Z.-Y. and E. C. Brummer (2012). "Is genetic engineering ever going to take off in forage, turf and bioenergy crop breeding?" Annals of Botany. (published online ahead of print doi:10.1093/aob/mcs027) | Research Area: Biomass Formation and Modification | 10.1093/aob/mcs027 |
| 10/01/2011 | Wang | Spatial and temporal dynamics of cellulose degradation and biofilm formation by Caldicellulosiruptor obsidiansis and Clostridium thermocellum View Document |
AMB Express | Wang, Z.W., Lee, S.H., Elkins, J.G., Morrell-Falvey, J.L., Spatial and temporal dynamics of cellulose degradation and biofilm formation by Caldicellulosiruptor obsidiansis and Clostridium thermocellum, 1:30, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1186/2191-0855-1-30 |
| 08/30/2011 | Wang | Evaluations of Cellulose Accessibilities of Lignocelluloses by Solute Exclusion and Protein Adsorption Techniques View Document |
Biotechnology and Bioengineering | Wang, Q.Q., He, Z., Zhu, Z., Zhang, Y-H.P., Ni, Y., Luo, X.L., Zhu, J.Y., Evaluations of Cellulose Accessibilities of Lignocelluloses by Solute Exclusion and Protein Adsorption Techniques, Biotechnology and Bioengineering, 109(2):381-389, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.23330 |
| 04/15/2013 | Wang | Continuous live cell imaging of cellulose attachment by microbes under anaerobic and thermophilic conditions using confocal microscopy | Journal of Environmental Sciences | Wang, Z.W., Lee, S.H., Elkins, J.G., Li, Y., Hamilton-Brehm, S., Morrell-Falvey, J.L., Continuous live cell imaging of cellulose attachment by microbes under anaerobic and thermophilic conditions using confocal microscopy, Journal of Environmental Sciences, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1016/S1001-0742(12)60104-1 |
| 06/28/2009 | Wang | Cell-free protein systhesis energized by slowly-metabolized maltodextrin View Document |
BMC Biotechnology | Wang, Y. R., Zhang, Y. H. P., Cell-free protein synthesis energized by slowly-metabolized maltodextrin, BMC Biotechnology, 2009, 9:58. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1472-6750-9-58 |
| 08/01/2010 | Wang | A novel FRET approach for in situ investigation of cellulase–cellulose interaction View Document |
Analytical and Bioanalytical Chemistry | Wang, L.Q., Wang, Y.Q., Ragauskas, A.J., A novel FRET approach for in situ investigation of cellulase–cellulose interaction, Analytical and Bioanalytical Chemistry, Volume 398, Issue 3, pp 1257-1262, 2010. | Research Area: Characterization and Modeling | 10.1007/s00216-010-4057-1 |
| 03/01/2011 | Wang | Biohydrogenation from Biomass Sugar Mediated by in vitro Synthetic Enzymatic Pathways View Document |
Chemistry and Biology | Wang, Yiran, Huang, Weidong, Sathitsuksanoh, Noppadon, Zhu, Zhiguang, Zhang, Y.H. Percival, Biohydrogenation from Biomass mediated by in vitro synthetic enzymatic pathways, Chemistry and Biology, Volume 18 (3): 372-380, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.chembiol.2010.12.019 |
| 06/04/2009 | Wang | Overexpression and simple purification of the Thermotoga maritima 6-phosphogluconate dehydrogenase in Escherichia coli and its application for NADPH regeneration View Document |
Microbial Cell Factories | Wang, Y., Zhang, Y.H.P., Overexpression and simple purification of the Thermotoga maritima 6-phosphogluconate dehydrogenase in Escherichia coli and its application for NADPH regeneration, Microbial Cell Factories, 2009, 8:30. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1475-2859-8- |
| 10/01/2010 | Wang | Mathematical modeling of hydrolysate diffusion and utilization in cellulolytic biofilms of the extreme thermophile Caldicellulosiruptor obsidiansis | Bioresource Technology | Wang, Z.W., Hamilton-Brehm, S.D., Lochner, A., Elkins, J.G., Morrell-Falvey, J.L., Mathematical modeling of hydrolysate diffusion and utilization in cellulolytic biofilms of the extrme thermophile Caldicellulosiruptor obsidiansis, Bioresource Technology, 102:3155-62. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2010.10.104 |
| 10/01/2010 | Wang | Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants View Document |
PNAS | Wang, H. Z., Avci, U., Nakashima, J., Hahn, M. G., Chen, F., Dixon, R. A., Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants, PNAS, Volume 107, Issue 51, pp 22338-22343, 2010. | Research Area: Biomass Formation and Modification | 10.1073/pnas.1016436107 |
| 04/10/2012 | Wei | Tracking dynamics of plant biomass compositing by changes in substrate structure, microbial community, and enzyme activity View Document |
Biotechnology for Biofuels | Wei, H., Tucker, M., Baker, J., Harris, M., Luo, Y., Xu, Q., Himmel, M., Ding, S-Y., Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity, Biotechnology for Biofuels, 5:20, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-20 |
| 11/24/2011 | Wilson | Processive and nonprocessive cellulases for biofuel production—lessons from bacterial genomes and structural analysis View Document |
Applied Microbiology and Biotechnology | Wilson, D. (2012). "Processive and nonprocessive cellulases for biofuel production—lessons from bacterial genomes and structural analysis." Applied Microbiology and Biotechnology 93(2): 497-502. | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00253-011-3701-9 |
| 08/01/2012 | Wilson | Cellulase Processivity | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Wilson, D.B., Kostylev, M., Cellulase Processivity, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908;93-99, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_9 |
| 05/01/2011 | Wilson | Microbial diversity of cellulose hydrolysis View Document |
Current Opinion in Microbiology | Wilson, David B., Microbial diversity of cellulose hydrolysis, Current Opinion in Microbiology, 14(3): 259-263, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.mib.2011.04.004 |
| 12/22/2011 | Wisniewski-Dye | Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments View Document |
PLoS Genetics | Wisniewski-Dye´ F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, et al. (2011) "Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments." PLoS Genet 7(12): e1002430. | Research Area: Biomass Formation and Modification | doi:10.1371/journal.pgen.1002430 |
| 06/01/2010 | Wuichet | Origins and Diversification of a Complex Signal Transduction System in Prokaryotes View Document |
Science Signaling | Wuichet, K., Zhulin, I.B., Origins and Diversification of a Complex Signal Transduction System in Prokaryotes, Science Signaling, Vol. 3, Issue 128, p. 50, 2010. | Research Area: Characterization and Modeling | 10.1126/scisignal.2000724 |
| 01/01/2010 | Wuichet | Evolution and phyletic distribution of two-component signal transduction systems View Document |
Current Opinion in Microbiology | Wuichet, Kristin, Cantwell, Brian J., Zhulin, Igor B., Evolution and phyletic distribution of two-component signal transduction systems, Current Opinion in Microbiology, Volume 13, Issue 2, pp 219-225, 2010. | Research Area: Biomass Formation and Modification | 10.1016/j.mib.2009.12.011 |
| 10/25/2012 | Wullschleger | Revisiting the sequencing of the first tree genome: Populus trichocarpa View Document |
Tree Physiology | Wullschleger, S.D., Weston, D.J., DiFazio, S.P., Tuskan, G.A., Revisiting the sequencing of the first tree genome: Populus trichocarpa, Tree Physiology, 00 (1-8), 2012. | Research Area: Biomass Formation and Modification | 10.1093/treephys/tps081 |
| 03/01/2013 | Wyman | Chemical and Biological Deconstruction of Aqueous Phase Processing View Document |
Catalysis for the Conversion of Biomass and Its Derivatives | Wyman, C.E., Wyman, C.J., Chemical and Biological Deconstruction of Aqueous Phase, editors; Behrens, M., and Datye, .K., Catalysis for the Conversion of Biomass and Its Derivates, chapter 6, p. 165-182, 2013. | Research Area: Characterization and Modeling | |
| Wyman | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals - Introduction | Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals | Wyman, C.E., Introduction, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, (ed Wyman, C.E.), chapter 1, pp 1-20, 2013. | Research Area: Characterization and Modeling | 10.1002/9780470975831 | |
| 03/01/2008 | Xi | Agrobacterium-mediated transformation of switchgrass and inheritance of the transgenes BER-133R1 View Document |
BioEnergy Research | Xi, Y. J., Fu, C. X., Ge, Y. X., Nandakumar, R., Hisano, H., Bouton, J., Wang, Z. Y., Agrobacterium-Mediated Transformation of Switchgrass and Inheritance of the Transgenes, Bioenergy Research, Volume 2, Number 4, pp 275-283, December, 2009 | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9049-7 |
| 02/02/2010 | Xie | PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis View Document |
PNAS | Xie, Zhihong, Ulrich, Luke E., Zhulin, Igor B., Alexandre, Gladys, PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis, PNAS, Volume 107, Issue 5, pp 2235-2240, 2010. | Research Area: Biomass Formation and Modification | 10.1073/pnas.0910055107 |
| 07/25/2011 | Xu | Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production View Document |
New Phytologist | Xu, B., Escamilla-Trevino, L.L., Sathitsuksanoh, N., Shen, Z., Shen, H., Zhang, Y.H.P, Dixon, R.A., Zhao, B., Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production, New Phytologist, 192(3):611-625, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1111/j.1469-8137.2011.03830.x |
| 08/03/2010 | Xu | Probing the mechanism of cellulosome attachment to the Clostridium thermocellum cell surface: computer simulation of the Type II cohesin–dockerin complex
and its variants View Document |
Protein Engineering, Design and Selection | Xu, J., Smith, J.C., Probing the mechanism of cellulosome attachment to the Clostridium thermocellum cell surface: computer simulation of the Type II cohesin–dockerin complex and its variants, Protein Engineering, Design and Selection, Vol. 23, no. 10, pp 759-768, 2010. | Research Area: Characterization and Modeling | 10.1093/protein/gzq049 |
| 05/01/2009 | Xu | Building a Foundation for Structure-Based Cellulosome Design for Cellulosic Ethanol: Insight into Cohesin-Dockerin Complexation from Computer Simulation View Document |
Protein Science | Xu, J.C., Crowley, M.F., Smith, J.C., Building a Foundation for Structure-Based Cellulosome Design for Cellulosic Ethanol: Insight into Cohesin-Dockerin Complexation from Computer Simulation, Protein Science, 18;5, pp 949 - 959, 2009 | Research Area: Biomass Deconstruction and Conversion | |
| 10/09/2009 | Xu | Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom View Document |
BMC Bioinformatics | Xu, Zhanyou, Zhang, Dandan, Hu, Jun, Zhou, Xin, Ye, Xia, Reichel, Kristen L., Stewart, Nathan R., Syrenne, Ryan D., Yang, Xiaohan, Gao, Peng, Shi, Weibing, Doeppke, Crissa, Sykes, Robert W., Burris, Jason N., Bozell, Joseph J., Cheng, Max Zong-Ming, Hayes, Douglas G., Labbe, Nicole, Davis, Mark, Stewart, C. Neal, Jr., Yuan, Joshua S., Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom, BMC Bioinformatics, 2009, 10(Suppl ii):S3. | Research Area: Biomass Formation and Modification | 10.1186/1471-2105-10-S11-S3 |
| 01/01/2010 | Xu | Computational Challenges in Deciphering Genomic Structures of Bacteria View Document |
Journal of Computer Science and Technology | Xu, Y., Computational Challenges in Deciphering Genomic Structures of Bacteria, Journal of Computer Science and Technology, 25;1, pp 53-70, 2010. | Research Area: Characterization and Modeling | |
| 12/01/2012 | Xu | Overexpression of AtLov1 in Switchgrass alters plant architecture, lignin content, and flowering time View Document |
PlosOne | Xu, B., Sathitsuksanoh, N., Tang, Y., Udvardi, M.K., Zhang, J.Y., Shen, Z., Balota, M., Harich, K., Zhang, P.Y.H., Zhao, B., Overexpression of AtLOV1 in Switchgrass alters plant architecture, lignin content, and flowering time, PLOSONE, 7(12), e47399, 2012. | Research Area: Biomass Formation and Modification | 10.1371/journal.pone.0047399 |
| 08/05/2011 | Xu | Multifunctional Enzyme Systems for Plant Cell Wall Degradation | Comprehensive Biotechnology (Second Edition) | Xu, Q., Y. Luo, et al. (2011). 3.03 - Multifunctional Enzyme Systems for Plant Cell Wall Degradation. Comprehensive Biotechnology (Second Edition). M.-Y. Editor-in-Chief: Murray. Burlington, Academic Press: 15-25. | Research Area: Biomass Deconstruction and Conversion | 10.1016/B978-0-08-088504-9.00167-7 |
| 07/01/2011 | Yang | Enzymatic hydrolysis of cellulosic biomass View Document |
Biofuels | Yang, B., Z. Dai, et al. (2011). "Enzymatic hydrolysis of cellulosic biomass." Biofuels 2(4): 421-450. | Research Area: Characterization and Modeling | 10.4155/bfs.11.116 |
| 01/01/2012 | Yang | Genomics on Pretreatment Inhibitor Tolerance of Zymomonas mobilis View Document |
Microbial Stress Tolerance for Biofuel (book chapter) | Yang, S., Keller, M., Brown, S.D., Microbial Stress Tolerance for Biofuels, Microbiology Monographs, 2012, Volume 22/2012, 161-175. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-3-642-21467-7_7 |
| 12/20/2011 | Yang | In-microbe formation of nucleotide sugars in engineered Escherichia coli View Document |
Analytical Biochemistry | Yang, T., Y. Bar-Peled, et al. (2012). "In-microbe formation of nucleotide sugars in engineered Escherichia coli." Analytical Biochemistry 421(2): 691-698. | Research Area: Biomass Formation and Modification | 10.1016/j.ab.2011.12.028 |
| 07/23/2012 | Yang | Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress View Document |
BMC Genomics | Yang, S., Giannone, R.J., Dice, L., Yang, Z.K., Engle, N.L., Tschaplinski, T.J., Hettich, R.L., Brown, S.D., Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress, BMC Genomics, 13:336, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1471-2164-13-336 |
| 12/01/2009 | Yang | Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | Sung-Jae Yang, Irina Kataeva, Juergen Wiegel, Yanbin Yin, Phuongan Dam, Ying Xu, Janet Westpheling and Michael W. W. Adams, Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. Nov., International Journal of Systematic and Evolutionary, Microbiology, Volume 60, Part 9, pp 2011-2015 | Research Area: Biomass Deconstruction and Conversion | 10.1099/ijs.0.017731-0 |
| 01/01/2012 | Yang | Ethanol-tolerant Gene Identification in Clostridium thermocellum using Pyro-resequencing for Metabolic Engineering | Microbial Metabolic Engineering: Methods and Protocals | Yang, S., Klingeman, D, Brown, S.D., Ethanol-tolerant Gene Identification in Clostridium thermocellum using Pyro-resequencing for Metabolic Engineering, Methods in Molecular Biology, Vol. 834 Cheng, Qiong, 1st Edition, 2012;834:111-36. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-483-4_9 |
| 08/31/2010 | Yang | Genomic aspects of research involving polyploid plants View Document |
Plant Cell, Tissue and Organ Culture (PCTOC) | Yang, Xiaohan, Ye, Chu-Yu, Cheng, Zong-Ming, Tschaplinski, Timothy J., Wullschleger, Stan D., Yin, Weilun, Xia, Xinli, Tuskan, Gerald A., Genomic aspects of research involving polyploid plants, Plant Cell Tissue and Organ Culture, 2011, 104:387-397. | Research Area: Biomass Formation and Modification | 10.1007/s11240-010-9826-1 |
| 06/01/2010 | Yang | Identification of a novel UDP-sugar Pyrophosphorylase with a broad substrate specificity In Trypanosoma cruzi | Biochemical Journal | Yang T, Bar-Peled M. (2010) Identification of a novel UDP-sugar pyrophosphorylase with a broad substrate specificity in Trypanosoma cruzi. Biochem J.;429(3):533-43. | Research Area: Biomass Formation and Modification | 10.1042/BJ20100238 |
| 02/17/2011 | Yang | Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics View Document |
Plant Science | Yang, Xiaohan, Ye, Chu-Yu, Bisaria, Anjali, Tuskan, Gerald A., Kalluri, Udaya C., Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparatie genomics, Plant Science, 181(6): 675-687, 2011. | Research Area: Biomass Formation and Modification | 10.1016/J.plantsci.2011.01.020 |
| 08/07/2009 | Yang | Identification of galacturonic acid-1-P kinase: a new member of the GHMP kinase super family in plants and comparison with galactose-1-P kinase View Document |
Journal of Biological Chemistry | Yang T, Bar-Peled L, Gebhart L, Lee SG, Bar-Peled M. (2009)Identification of galacturonic acid-1-phosphate kinase, a new member of the GHMP kinase superfamily in plants, and comparison with galactose-1-phosphate kinase. J Biol Chem. 284(32):21526-35. | Research Area: Biomass Formation and Modification | |
| 05/01/2009 | Yang | Efficient degradation of lignocellulosic plant biomass without pretreatment by the thermophilic anaerobe, Anaerocellum thermophilum DSM 6725 View Document |
Applied and Environmental Microbiology | Yang, S.J., Kataeva, I., Hamilton-Brehm, S., Engle, N.D., Tschaplinski, T.J., Doeppke, Cr., Davis, M., Westpheling, J., Adams, M.W.W., Efficient degradation of lignocellulosic plant biomass without pretreatment by the thermophilic anaerobe, Anaerocellum thermophilium, Applied and Environmental Microbiology, Volume 75, Issue 14, pp 4762-4769 | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.00236-09 |
| 03/02/2011 | Yang | Discovery and annotation of small proteins using genomics, proteomics, and computational approaches View Document |
Genome Research | Yang, Xiaohan, Tschaplinski, Timothy J., Hurst, Gregory B., Jawdy, Sara, Abraham, Paul E., Lankford, Patricia K., Adams, Rachel M., Shah, Manesh B., Hettich, Robert L., Lindquist, Erika, Kalluri, Udaya C., Gunter, Lee E., Pennacchio, Christa, Tuskan, Gerald A., Discovery and annotation of small proteins using genomics, proteomics, and computational approaches, Genome Research, 21: 634-641, 2011. | Research Area: Biomass Formation and Modification | 10.1101/gr.109280.110 |
| 04/07/2010 | Yang | The Zymomonas mobilis regulator Hfq and related Saccharomyces cerevisiae proteins contribute to tolerance against multiple lignocellulosic pretreatment inhibitors View Document |
BMC Microbiology | Yang, S.H., Pelletier, D.A., Lu, T.Y.S, Brown, S.D., The Zymomonas mobilis regulator Hfq and related Saccharomyces cerevisiae proteins contribute to tolerance against multiple lignocellulosic pretreatment inhibitors, BMC Microbiology, 10;135, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1471-2180-10-135 |
| 01/20/2009 | Yang | Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations View Document |
BMC Genomics | Yang, S.H., Tschaplinski, T.J., Engle, N.L., Carroll, S.L., Martin, S.L., Davison, B.H., Palumbo, A.V., Rodriguez, M., Brown, S.D., Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations, BMC Genomics, 10;34; 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1471-2164-10-34 |
| 04/01/2010 | Yang | Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae View Document |
PNAS | Yang, S.H., Land, M.L., Klingeman, D.M., Pelletier, D.A., Lu, T.Y.S., Martin, S.L., Guo, H.B., Smith, J.C., Brown, S.D., Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae, PNAS, 107;23, pp 10398-10400, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1073/pnas.0914506107 |
| 10/14/2009 | Yang | Natural variation for nutrient-use and remobilization efficiencies in switchgrass BER-124R1 View Document |
BioEnergy Research | Yang J, E Worley, M Wang, B Lahner, D E Salt, M Saha, M Udvardi (2009) Natural Variation for Nutrient Use and Remobilization Efficiencies in Switchgrass. Bioenergy Res. 2:257–266. | Research Area: Biomass Formation and Modification | 10.1007/s12155-009-9055-9 |
| 01/01/2009 | Yang | Poplar genomics: State of the science View Document |
Critical Reviews in Plant Sciences | Yang XH, Kalluri UC, DiFazio SP, Wullschleger SD, Tschaplinski TJ, Cheng ZM, Tuskan GA. Poplar Genomics: State of the Science. Critical Reviews in Plant Sciences 2009;Volume 28, Issue 5, pp 285-308, 2009 | Research Area: Biomass Formation and Modification | 10.1080/07352680903241014 |
| 07/05/2011 | Yang | Innovative Biological Solutions to Challenges in Sustainable Biofuels Production View Document |
Biofuel Production-Recent Developments and Prospects | Xiaohan Yang, Ting Li, David Weston, Abhijit Karve, Jessy L. Labbe, Lee E. Gunter, Poornima Sukumar, Anne Borland, Jin-Gui Chen, Stan D. Wullschleger, Timothy J. Tschaplinski and Gerald A. Tuskan. Innovative Biological Solutions to Challenges in Sustainable Biofuels Production. 2011. In book "Biofuel Production-Recent Developments and Prospects", ( ed. Marco Aurélio dos Santos Bernardes), InTech, Chapter 15, p. 375-414. | Research Area: Biomass Formation and Modification | ISBN: 978-953-307-478-8 |
| 10/01/2009 | Yang | Improved genome annotation for Zymomonas mobilis View Document |
Nature Biotechnology | Yang, S.H., Pappas, K.M., Hauser, L.J., Land, M.L., Chen, G.L., Hurst, G.B., Pan, C.L., Kouvelis, V.N., Typas, M.A., Pelletier, D.A., Klingeman, D.M., Chang, Y.J., Samatova, N.F., Brown, S.D., Improved genome annotation for Zymomonas mobilis, Nature Biotechnology, 27;10, pp 893 - 894, 2009. | Research Area: Biomass Deconstruction and Conversion | 10.1038/nbt1009-893 |
| 06/17/2010 | Yang | Identification and characterization of a strict and a promiscuous N-acetylglucosamine-1-P uridylyltransferase in Arabidopsis View Document |
Biochemical Journal | Yang T, Echols M, Martin A, Bar-Peled M. (2010) Identification and characterization of a strict and a promiscuous N-acetylglucosamine-1-P uridylyltransferase in Arabidopsis. Biochem J. 430(2):275-84. | Research Area: Biomass Formation and Modification | :10.1042/BJ20100315 |
| 12/17/2010 | Yao | QM/MM Free Energy Simulations of Salicylic Acid Methyltransferase: Effects of Stabilization of TS-like Structures on Substrate Specificity View Document |
Journal of Physical Chemistry B | Yao, Jianzhuang, Xu, Qin, Chen, Feng, Guo, Hong, QM/MM Free Energy Simulations of Salicylic Acid Methyltransferase: Effects of Stabilization of TS-like Structures on Substrate Specificity, The Journal of Physical Chemistry B, 115, 389-396, 2011. | Research Area: Biomass Formation and Modification | 10.1021/jp1086812 |
| 01/01/2009 | Ye | Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails View Document |
ChemSusChem | Ye, Xinhao, Yiran Wang, Robert C. Hopkins, Michael W. W. Adams, Barbara R. Evans, Jonathan R. Mielenz, Y.-H. Percival Zhang, Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails , ChemSusChem, (2009), 2(2), 149-52, 2009 | Research Area: Biomass Deconstruction and Conversion | 10.1002/cssc.200900017 |
| 09/12/2011 | Ye | Transgenic Populus trees for forest products, bioenergy, and functional genomics View Document |
Critical Reviews in Plant Sciences | Ye, Xia., Busov, V., Zhao, N., Meilan, R., McDonnell, L.M., Coleman, H.D., Mansfield, S.D., Chen, F., Li, Y., Cheng, Z.M., Transgenic Populus Trees for Forest Products, Bioenergy, and Functional Genomics, Critical Reviews in Plant Science, 30:415-434, 2011. | Research Area: Biomass Formation and Modification | 10.1080/07352689.2011.605737 |
| 03/01/2010 | Ye | Thermophilic alpha-glucan phosphorylase from Clostridium thermocellum: Cloning, characterization and enhanced thermostability View Document |
Journal of Molecular Catalysis B: Enzymatic | Ye, X., Rollin, J., Zhang, Y.H.P., Thermophilic α-glucan phosphorylase from Clostridium thermocellum: Cloning, characterization and enhanced thermostability, Journal of Molecular Catalysis B: Enzymatic, Volume 65, Issue 1-4, pp 110-116 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.molcatb.2010.1001.1015 |
| 06/01/2009 | Ye | Identification of the Flavin-dependent Monooxygenase-encoding YUCCA Gene Family in Populus trichocarpa and Their Expression in Vegetative Tissues and in Response to Hormone and Environmental Stresses View Document |
Plant Cell, Tissue and Organ Culture (PCTOC) - Journal of Plant Biotechnology | Ye, X., B-g Kang, L. D. Osburn, and Z.-M. Cheng. 2009 Identification of the Flavindependent Monooxygenase-encoding YUCCA Gene Family in Populus trichocarpa and Their Expression in Vegetative Tissues and in Response to Hormone and Environmental Stresses. PCTOC: J. of Plant Biotechnology 97:271–283(2009). | Research Area: Biomass Formation and Modification | 10.1007/s11240-009-9526-x |
| 08/18/2011 | Ye | Evolution and divergence in the coding and promoter regions of the Populus gene family encoding xyloglucan endotransglycosylase / hydrolases View Document |
Tree Genetics and Genomes | Ye, X., Yuan, S., Guo, H., Chen, F., Tuskan, G.A., Cheng, Z.M. (2012) "Evolution and divergence in the coding and promoter regions of the Populus gene family encoding exyloglucan endotransglycosylase/ hydrolases." Tree Genetics and Genomes 8:177–194. | Research Area: Biomass Formation and Modification | 10.1007/s11295-011-0431-1 |
| 05/03/2011 | Ye | Fusion of a family 9 cellulose-binding module improves catalytic potential of Clostridium thermocellum cellodextrin
phosphorylase on insoluble cellulose View Document |
Applied Microbiology and Biotechnology | Ye, X., Zhu, Z., Zhang, C., Zhang, Y.H.P., Fusion of a family 9 cellulose-binding module improves catalytic potential of Clostridium thermocellum cellodextrin phosphorylase on insoluble cellulose, Applied Microbiology and Biotechnology, 92(3): 551-560, 2011 | Research Area: Biomass Deconstruction and Conversion | 10.1007/s00253-011-3346-8 |
| 05/01/2011 | Ye | Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis View Document |
Plant Science | Ye, Chu-Yu, Li, Ting, Tuskan, Gerald A., Tschaplinski, Timothy J., Yang, Xiaohan, Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis, Plant Science, 181(6): 688-695, 2011. | Research Area: Biomass Formation and Modification | 10.1016/j.plantsci.2011.01.021 |
| 04/01/2012 | Ye | Engineering a large protein by combined rational and random approaches: stabilizing the Clostridium thermocellum cellobiose phosphorylase View Document |
Molecular BioSystems | Ye, X., Zhang, C., Zhang, Y-H.P., Engineering a large protein by combined rational and random approaches: stabilizing the Clostridium thermocellum cellobiose phosphorylase, Molecular BioSystems, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1039/c2mb05492b |
| 11/04/2012 | Ye | Evolutionary analyses of non-family genes in plants View Document |
The Plant Journal | Ye, C-Y., Li, T., Yin, H., Weston, D.J., Tuskan, G.A., Tschaplinski, T.J., Yang, X., Evolutionary analyses of non-family genes in plants, The Plant Journal, 73(5): 788-97, 2013. | Research Area: Biomass Formation and Modification | 10.1111/tpj.12073 |
| 11/12/2012 | Yee | Evaluation of the bioconversion of genetically modified switchgrass using simultaneous saccharification and fermentation and a consolidated bioprocessing approach View Document |
Biotechnology for Biofuels | Yee, K.L., Rodriguez Jr. M., Tschaplinski, T.J., Engle, N.L., Martin, M.Z., Fu, C., Wang, Z.Y., Hamilton-Brehm, S.D., Mielenz, J.R., Evaluation of the bioconversion of genetically modified switchgrass using simultaneous saccharification and fermentation and a consolidated bioprocessing approach, Biotechnology for Biofuels, 5:81, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1186/1754-6834-5-81 |
| 05/29/2012 | Yin | dbCAN: a web resource for automated carbohydrate-active enzyme annotation View Document |
Nucleic Acids Research | Yin, Y., Mao, X., Yang, J., Chen, X., Mao, F., Xu, Y., dbCAN: a web resource for automated carbohydrate-active enzyme annotation, Nucleic Acids Research, 1-7, 2012. | Research Area: Characterization and Modeling | 10.1093/nar/gks479 |
| 11/18/2011 | Yin | Evolution of Plant Nucleotide-Sugar Interconversion Enzymes View Document |
PloS One | Yin, Y., Huang, J., Gu, X., Bar-Peled, M., Xu, Y. (2011) "Evolution of Plant Nucleotide-Sugar Interconversion Enzymes." Plos one, 6(11):e27995. | Research Area: Characterization and Modeling | 10.1371/ journal.pone.0027995 |
| 03/01/2010 | Yin | Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8 View Document |
Plant Physiology | Yin, Y.B., Chen, H.L., Hahn, M.G., Mohnen, D., Xu, Y., Evolution and Function of the Plant Cell Wall Synthesis-Related Glycosyltransferase Family 8, Plant Physiology, Volume 153, Issue 4, pp 1729-1746, 2010. | Research Area: Biomass Formation and Modification | 10.1104/pp.110.154229 |
| 03/22/2010 | Yin | Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome | PNAS | Yin, Y.B., Zhang, H., Olman, V., Xu, Y., Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome, PNAS, 107 (14):6310-5, 2010. | Research Area: Biomass Formation and Modification | |
| 12/22/2010 | Yin | Glycosyltransferases of the GT8 Family | Annual Plant Reviews, Plant Polysaccharides, Biosynthesis and Bioengineering | Yin, Y., Mohnen, D., Gelineo-Albersheim, I., Xu, Y. and Hahn, M. G., Glycosyltransferases of the GT8 Family, in Annual Plant Reviews: Plant Polysaccharides, Biosynthesis and Bioengineering, Volume 41 (ed P. Ulvskov), Wiley-Blackwell, Oxford, UK, 2010. | Research Area: Biomass Formation and Modification | 10.1002/9781444391015.ch6 |
| 11/22/2010 | Yin | Differential Detection of Genetic Loci Underlying Stem and Root Lignin Content in Populus View Document |
PloS One | Yin, T., Zhang, X., Gunter, L., Priya, R., Sykes, R., Davis, M., Wullschleger, S.D., Tuskan, G.A.,Differential Detection of Genetic Loci Underlying Stem and Root Lignin Content in Populus, Plos One, 5(11): e14021, 2010. | Research Area: Biomass Formation and Modification | 10.1371/journal.pone.0014021 |
| 07/31/2009 | Yin | The cellulose synthase superfamily in fully sequenced plants and algae View Document |
BMC Plant Biology | Yin, Y.B., Huang, J.L., Xu, Y., The cellulose synthase superfamily in fully sequenced plants and algae, BMC Plant Biology, 9;99, 2009. | Research Area: Characterization and Modeling | 10.1186/1471-2229-9-99 |
| 01/01/2009 | Yin | Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome View Document |
New Phytologist | Yin, T. M., Zhang, X. Y. Gunter, L. E., Li, S. X., Wullschleger, S. D., Huang, M. R., Tuskan, G., A. Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome, New Phytologist, Volume 181, Number 2, January 2009 , pp. 498-503(6) | Research Area: Biomass Formation and Modification | 10.1111/j.1469-8137.2008.02663.x |
| 06/01/2008 | York | Biochemical control of xylan biosynthesis — which end is up? View Document |
Current Opinion Plant Biology | York WS, O'Neill MA. 2008. Biochemical control of xylan biosynthesis - which end is up? Current Opinion in Plant Biology 11(3):258-265. | Research Area: Biomass Formation and Modification | 2008 |
| 12/01/2011 | You | Enhanced microbial cellulose utilization of recalcitrant cellulose by an ex vivo cellulosome-microbe complex View Document |
Applied and Environmental Microbiology | You, C., Zhang, X.Z., Sathitsuksanon, N., Lynd, L.R., Zhang, Y.H.P (2011) "Enhanced microbial cellulose utilization of recalcitrant cellulose by an ex vivo cellulosome-microbe complex." Applied and Environmental Microbiology. (published ahead of print 30 December 2011, doi:10.1128/AEM.07138-11) | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.07138-11 |
| 12/01/2011 | You | Simple Cloning: direct transformation of PCR product (DNA multimer) to Escherichia coli and Bacillus subtilis View Document |
Applied and Environmental Microbiology | You, C., Zhang, X.Z., Zhang, Y.H.P., Simple Cloning: direct transformation of PCR product (DNA multimer) to Escherichia coli and Bacillus subtilis, Applied and Environmental Microbiology, 78;5, pp 1593-1595, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM07105-11 |
| 02/15/2012 | You | Mini-scaffoldin enhanced mini-cellulosome hydrolysis performance on low-accessibility cellulose (Avicel) more than on high-acccessibility amorphous cellulose View Document |
Biochemical Engineering Journal | You, C., Zhang, X.Z., Zhang, Zhang, Y.H.P., Mini-scaffoldin enhanced mini-cellulosome hydrolysis performance on low -accessibility cellulose (Avicel) more than on high-accessibility amorphous cellulose, Biochemical Engineering Journal, 2012. (published online ahead of print doi:10.1016/j.bej.2012.01.011) | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.bej.2012.01.011 |
| 05/22/2012 | You | Easy preparation of a large-size random gene mutagenesis library in Escherichia coli View Document |
Analytical Biochemistry | You, C., Zhang, Y.H.P, Easy preparation of a large-size random gene mutagenesis library in Escherichia coli, Analytical Biochemistry, 2012 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.ab.2012.05.022 |
| 07/23/2012 | You | Facilitated Substrate Channeling in a Self-Assembled Trifunctional Enzyme Complex View Document |
Angewandte Chemie | You, C., Myung, S., Zhang, Y.-H. P., Facilitated Sustrate Channeling in a Self-Assembled Trifunctional Enzyme Complex, Angewandte Chemie International Edition, 51, 1-5, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1002/anie.201202441 |
| You | Enzymatic transformation of nonfood biomass to starch | PNAS | You, C., Chen, H., Myung, S., Sathitsuksanoh, N., Ma. H., Zhang, X.Z., Li, J., Zhang, Y.-H.P., Enzymatic transformation of nonfood biomass to starch, PNAS, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1073/pnas.1302420110 | |
| 09/01/2011 | Yuan | US-China collaborative biofuel research: towards a global solution for petroleum replacement View Document |
Biofuels | Yuan, J.A., Qu, Y., Li, S., Stewart Jr., C.N., US-China collaborative biofuel research: towards a global solution for petroleum replacement, Biofuels, 2:5, 487-789, 2011. | Research Area: Biomass Formation and Modification | 10.4155/BFS.11.130 |
| 09/01/2011 | Yuan | Biomass feedstock: diversity as a solution View Document |
Biofuels | Yuan, J.S., Wang, X., Stewart Jr., C.N., Biomass feedstock: diversity as a solution, Biofuels, 2:5, 491-493, 2011. | Research Area: Biomass Formation and Modification | 10.4155/BFS.11.135 |
| 08/01/2008 | Yuan | Plants to power: bioenergy to fuel the future View Document |
Trends in Plant Science | Yuan, Joshua S., Kelly H. Tiller, Hani Al-Ahmad, Nathan R. Stewart, C. Neal Stewart, Jr., Plants to power: bioenergy to fuel the future, Trends in Plant Science, Vol. 13(8), 421-429, 2008 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.tplants.2008.06.001 |
| 02/25/2010 | Zeng | Imaging Lignin-Downregulated Alfalfa Using Coherent Anti-Stokes Raman Scattering Microscopy View Document |
BioEnergy Research | Zeng Y, Saar BG, Friedrich MG, Chen F, Liu Y, Dixon RA, Himmel ME, Xie XS and Ding S (2010), Imaging Lignin‐Downregulated Alfalfa Using Coherent Anti‐Stokes Raman Scattering Microscopy, Bioenerg. Res. 3:272–277, Volume 3, Issue 3, pp 272-277 | Research Area: Characterization and Modeling | 10.1007/s12155-010-9079-1 |
| 08/01/2012 | Zeng | Coherent Raman Microscopy Analysis of Plant Cell Walls | Methods in Molecular Biology Biomass Conversion: Methods and Protocols | Zeng, Y., Himmel, M.E., Ding, S.Y., Coherent Raman Microscopy Analysis of Plant Cell Walls, Methods in Molecular Biology Biomass Conversion: Methods and Protocols, 908:49-60, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-61779-956-3_5 |
| 10/01/2012 | Zhang | Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass View Document |
Crop Science | Zhang, Y., Zalapa, J., Jakubowski, A.R., Price, D.L., Acharya, A., Brummer, E.C., Kaeppler, S.M., Casler, M.D., Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass, Crop Science, 51, 2012. | Research Area: Biomass Formation and Modification | 10.2135/cropsci2011.02.0104 |
| 01/03/2012 | Zhang | Genomic Arrangement of Regulons in Bacterial Genomes View Document |
PLoS One | Zhang, H., Y. Yin, et al. (2012). "Genomic Arrangement of Regulons in Bacterial Genomes." PLoS ONE 7(1): e29496. | Research Area: Characterization and Modeling | 10.1371/journal.pone.0029496.g001 |
| 06/07/2011 | Zhang | Substrate channeling and enzyme complexes for biotechnological applications View Document |
Biotechnology Advances | Zhang, Y.-H.P. (2011). Substrate channeling and enzyme complexes for biotechnological applications. Biotechnology Advances 29:715-725. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biotechadv.2011.05.020 |
| 03/03/2012 | Zhang | A new high-energy density hydrogen carrier—carbohydrate—might be better than methanol View Document |
International Journal of Energy Research | Percival Zhang, Y.-H., J.-H. Xu, et al. (2012). "A new high-energy density hydrogen carrier—carbohydrate—might be better than methanol." International Journal of Energy Research. (published online ahead of print doi:10.1002/er.2897) | Research Area: Biomass Deconstruction and Conversion | 10.1002/er.2897 |
| 01/05/2013 | Zhang | Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.) View Document |
The Plant Journal | Zhang, J.Y., Lee, Y.C., Torres-Jerez, I., Wang, M., Yin, Y., Chou, W.C., He, J., Shen, H., Srivastava, A.C., Pennacchio, C., Lindquist, E., Grimwod, J., Schmutz, J., Xu, Y., Sharma, M., Sharma, R., Bartley, L.E., Ronald, P.C., Saha, M.C., Dixon, R.A., Tang, Y., Udvardi, M.K., Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.), The Plant Journal, 2012 | Research Area: Biomass Formation and Modification | 10.1111/tpj.12104 |
| 08/12/2011 | Zhang | Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass View Document |
Crop Science | Zhang, Y., Zalapa, J.E., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E.C., Kaeppler, S.M., Casler, M.D, Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass, Crop Science, 51, 2011. | Research Area: Biomass Formation and Modification | 10.2135/cropsci2011.02.0104 |
| 08/02/2010 | Zhang | One-step production of biocommodities from lignocellulosic biomass by recombinant cellulolytic Bacillus subtilis: Opportunities and challenges View Document |
Engineering in Life Sciences | Zhang, X. Z., Zhang, Y. H. P., One-step production of biocommodities from lignocellulosic biomass by recombinant cellulolytic Bacillus subtilis: Opportunities and challenges, Engineering in Life Science, Volume 10, Issue 5, pp 398-406, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1002/elsc.201000011 |
| 05/03/2011 | Zhang | One-step production of lactate from cellulose as the sole carbon source without any other organic nutrient by recombinant cellulolytic Bacillus subtillis View Document |
Metabolic Engineering | Zhang, Xiao-Zhou, Sathitsuksanoh, Noppadon, Zhu, Zhiguang, Zhang, Y.H. Percival, One-step production of lactate from cellulose as the sole carbon source without any other organic nutrient by recombinant cellulolytic Bacillus subtilis, Metabolic Engineering, 13(4): 364-372, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.ymben.2011.04.003 |
| 03/01/2010 | Zhang | The non-cellulosomal family 48 cellobiohydrolase from Clostridium phytofermentans ISDg: Heterologous expression, characterization, and processivity. View Document |
Applied Microbiology and Biotechnology | Zhang, Z.Z., Zhang, Z., Zhu, Z., Sathitsuksanoh, N., Yang, Y., Zhang, Y.H.P., The noncellulosomal family 48 cellobiohydrolase from Clostridium phytofermentans ISDg: heterologous expression, characterization, and processivity, Applied Microbiology Biotechnology, 2010, Volume 86, Number 2; p 525-533 | Research Area: Biomass Deconstruction and Conversion | http://dx.doi.org/10.1007/s00253-009-2231-1 |
| 07/04/2011 | Zhang | Toward low-cost biomanufacturing through in vitro synthetic biology:
bottom-up design View Document |
Journal of Materials Chemistry | Zhang, Y.H. Percival, Myung, Suwan, You, Chun, Zhu, Zhiguang, Rollin, J.A., Toward low-cost biomanufacturing through invitro synthetic biology: bottom-up design, Journal of Materials Chemistry, 21(47):18877-18886, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1039/c1jm12078f |
| 01/04/2011 | Zhang | Simple, fast and high-efficiency transformation system for directed evolution of cellulase in Bacillus subtilis View Document |
Microbial Biotechnology | Zhang, Xiao-Zhou, Zhang, Y.H. Percival, Simple, fast and high-efficiency transformation system for directed evolution of cellulase in Bacillus subtilis, Microbial Biotechnology, 4: 98-105, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1111/j.1751-7915.2010.00230.x |
| 07/01/2011 | Zhang | Simpler Is Better: High-Yield and Potential Low-Cost Biofuels Production through Cell-Free Synthetic Pathway Biotransformation (SyPaB) View Document |
ACS Catalysis | Zhang, Y.H. Percival, Simpler Is Better: High-Yield and Potential Low-Cost Biofuels Production through Cell-Free Synthetic Pathway Biotransformation (SyPaB), ACS Catalysis, 1: 998-1009, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1021/cs200218f |
| 11/01/2009 | Zhang | Production of biocommodities and bioelectricity by cell-free synthetic enzymatic pathway biotransformations (SyPaB): Challenges and opportunities View Document |
Biotechnology and Bioengineering | Zhang YHP. Production of Biocommodities and Bioelectricity by Cell-Free Synthetic Enzymatic Pathway Biotransformations: Challenges and Opportunities. Biotechnology and Bioengineering 2010;105(4):663-677. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22630 |
| 07/23/2011 | Zhang | Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences View Document |
Genetica | Zhang, Y., Zalapa, J.E., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E.C., Kaeppler, S.M., Casler, M.D.,Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences, Genetica, 139:933-948, 2011. | Research Area: Biomass Formation and Modification | 10.1007/s10709-011-9597-6 |
| 07/01/2010 | Zhang | Renewable carbohydrates are a potential high-density hydrogen carrier View Document |
International Journal of Hydrogen Energy | Zhang, Y.H.P., Renewable carbohydrates are a potential high-density hydrogen carrier, International Journal of Hydrogen Energy, Volume 35, Issue 19, pp 10334-10342, 2010. | Research Area: Biomass Deconstruction and Conversion | doi:10.1016/j.ijhydene.2010.07.132 |
| 01/31/2011 | Zhang | Renewable Hydrogen Carrier — Carbohydrate: Constructing
the Carbon-Neutral Carbohydrate Economy View Document |
Energies | Zhang, Y-H Percival, Mielenz, Jonathan R., Renewable Hydrogen Carrier -- Carbohydrate: Constructing the Carbon-Neutral Carbohydrate Economy, energies, 4, 254-275, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.3390/en4020254 |
| 06/01/2010 | Zhang | Biofuel production by in vitro synthetic pathway biotransformation View Document |
Current Opinion in Biotechnology | Zhang, Y. H. P., Sun, J. B., Zhong, J. J., Biofuel production by in vitro synthetic enzymatic pathway biotransformation, Current Opinion in Biotechnology, Volume 21, Issue 5, pp 663-669, 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.copbio.2010.05.005 |
| 01/01/2009 | Zhang | A sweet and out-of-the-box solution for the hydrogen economy: Is sugar-powered car science fiction? View Document |
Energy and Environmental Science | Zhang YHP. A sweet out-of-the-box solution to the hydrogen economy: is the sugar-powered car science fiction? Energy and Environmental Science 2009;2(3):272-282. | Research Area: Biomass Deconstruction and Conversion | 10.1039/ b818694d |
| 01/01/2009 | Zhang | Advances in cellulose solvent- and organic solvent-based lignocellulose fractionation (COSLIF) | ACS Symposium Series | Zhang Y-HP, Zhu Z, Rollin J, Sathisuksanoh N. 2010. Chapter 20. Advances in cellulose solvent- and organic solvent-based lignocellulose fractionation (COSLIF). ACS Symposium Series 1033: 365-379 (Cellulose solvents: For analysis, shaping and chemical modification), Oxford University Press, UK, ISBN13: 9780841200067. | Research Area: Biomass Deconstruction and Conversion | 10.1021/bk-2010-1033.ch020. |
| 08/01/2011 | Zhang | What is vital (and not vital) to advance economically-competitive biofuels production View Document |
Process Biochemistry | Zhang, Y.H.P., What is vital (and not vital) to advance economically-competitive biofuels production, Process Biochemistry, 46(11):2091-2110, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.procbio.2011.08.005 |
| 09/01/2009 | Zhang | Cellulase Assays View Document |
Biofuels: Methods and Protocols | Y.H. Percival Zhang, Jiong Hong, and Xinhao Ye, Cellulase Assays, Biofuels: Methods and Protocols, Methods in Molecular Biology, Jonathan R. Mielenz (ed.), vol. 581; 2009 Chapter 14 | Research Area: Biomass Deconstruction and Conversion | 10.1007/978-1-60761-214-8_14 |
| 10/10/2010 | Zhang | Ethanol Production From Paper Sludge by Simultaneous Saccharification and Co-Fermentation Using Recombinant Xylose-Fermenting Microorganisms View Document |
Biotechnology and Bioengineering | Zhang, Jiayi, Lynd, L. R., Ethanol Production from Paper Sludge by Simultaneous Saccharification and Co-Fermentation Using Recombinant Xylose-Fermenting Microorganisms, Biotechnology and Bioengineering, Vol. 107, No. 2., pp 235-244, October 2010. | Research Area: Biomass Deconstruction and Conversion | 10.1002/bit.22811 |
| 06/01/2010 | Zhang | Glycoside hydrolase family 9 processive endoglucanase from Clostridium phytofermentans: Heterologous expression, purification, and synergy with family 48 cellobiohydrolase View Document |
Bioresource Technology | Glycoside hydrolase family 9 processive endoglucanase from Clostridium phytofermentans: heterologous expression, purfication, and synergy with family 48 cellobiohydrolase, Bioresource Technology, Zhang, X.Z., Sathisuksanoh, N., Zhang, Y.H.P., Volume 101, Issue 14 pp 5534-5538, 2010 | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.biortech.2010.01.152 |
| 07/11/2011 | Zhang | Hydrogen Production from Carbohydrates: A mini-review View Document |
ACS Symposium Series | Zhang, Y.H.P., Hydrogen Production from Carbohydrates: a mini-review, Sustainable Production of Fuels, Chemicals, and Fibers from Forest Biomass, ACS Symposium Series, V 1067, 8, pp 203-216. | Research Area: Biomass Deconstruction and Conversion | ISBN13: 9780841226432eISBN: 9780841226449 |
| 03/01/2010 | Zhao | A NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula View Document |
Plant Journal | Zhao Q, Gallego‐Giraldo L, Wang H, Zeng Y, Ding SY, Chen F, Dixon RA. (2010) An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. Plant J. 63(1):100‐14. | Research Area: Biomass Formation and Modification | 10.1111/j.1365-313X.2010.04223.x |
| 07/01/2010 | Zhao | Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch View Document |
PNAS | Zhao, Q. A., Wang, H. Z., Yin, Y. B., Xu, Y., Chen, F., Dixon, R. A., Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch, PNAS, Volume 107, Issue 32, pp 14496-14501, 2010. | Research Area: Biomass Formation and Modification | 10.1073 |
| 01/01/2009 | Zhao | Two poplar methyl salicylate esterases display comparable biochemical properties but divergent expression patterns View Document |
Phytochemistry | Zhao, N., Guan, J., Forouhar, F., Tschaplinski, T.J., Cheng, C‐M., Tong L., and Chen, F. (2009) Two poplar methyl salicylate esterases display comparable biochemical properties but divergent expression patterns. Phytochemistry 70: 37‐44. | Research Area: Biomass Formation and Modification | 10.1016/j.phytochem.2008.11.014 |
| 03/05/2012 | Zhou | Qserver: A Biclustering Server for Prediction and Assessment of Co-Expressed Gene Clusters View Document |
PLoS One | Zhou F, Ma Q, Li G, Xu Y (2012). "Qserver: A Biclustering Server for Prediction and Assessment of Co-Expressed Gene Clusters." PLoS ONE 7(3): e32660. | Research Area: Characterization and Modeling | 10.1371/journal.pone.0032660 |
| 08/14/2012 | Zhou | Identification and characterization of petiolule-like pulvinus mutants with abolished nyctinastic leaf movement in the model legume Medicago truncatula View Document |
New Phytologist | Zhou, C., Han, L., Fu, C., Chai, M., Zheng, W., Li, G., Tang, Y., Wang, Z., Identification and characterization of petiolule-like pulvinus mutants with abolished nyctinastic leaf movement in the model legume Medicago truncatula, New Phytologist, 2012 | Research Area: Biomass Formation and Modification | 10.1111/j.1469-8137.2012.04268.x |
| 02/22/2013 | Zhou | An atypical glycolysis in Clostridium thermocellum | Applied and Environmental Microbiology | Zhou, J., Olson, D.G., Argyros, D.A., Deng, Y., van Gulik, W.M., van Dijken, J.P., Lynd, L.R., An atypical glycolysis in Clostridium thermocellum, Applied and Environmental Microbiology, 2013 | Research Area: Biomass Deconstruction and Conversion | 10.1128/AEM.04037-12 |
| 01/09/2009 | Zhou | RepPop: a database for repetitive elements in Populus trichocarpa View Document |
BMC Genomics | Zhou, F., Xu, Ying, RepPop: a database for repetitive elements in Populus trichocarpa, BMC Genomics, 10:14, 2009 | Research Area: Biomass Formation and Modification | 10.1186/1471-2164-10-14), |
| 12/01/2009 | Zhou | Large scale analyses of glycosylation in cellulases View Document |
Genomics, Proteomics and Bioinformatics | Zhou, Fengfeng, Olman, Victor, Xu, Ying, Large scale analyses of glycosylation in cellulases, Genomics, Proteomics and Bioinformatics, Volume 7, Issue 4, December 2009, Pages 194-199 | Research Area: Characterization and Modeling | 10.1016/S1672-0229(08)60049-2 |
| 06/16/2008 | Zhou | Barcodes for Genomes and Applications View Document |
BMC Bioinformatics | Zhou, Fengfeng, Victor Olman, Ying Xu , Barcodes for Genomes and Applications, BMC Bioinformatics, 9:546, 2008 | Research Area: Characterization and Modeling | 10.1186/1471-2105-9-546 |
| 04/27/2009 | Zhou | Cellulose hydrolysis in evolving substrate morphologies I: a general modeling formalism View Document |
Biotechnology and Bioengineering | Zhou, W., Schuttler, H.B., Hao, Z.Q., Xu, Y., Cellulose Hydrolysis in Evolving Substrate Morphologies I: A General Modeling Formalism, Biotechnology and Bioengineering, 104;(2), pp 261-274, 2009. | Research Area: Characterization and Modeling | 10.1016/S1672-0229(08)60049-2 |
| 04/27/2009 | Zhou | Cellulose hydrolysis in evolving substrate morphologies II: numerical results and analysis View Document |
Biotechnology and Bioengineering | Zhou, W., Hao, Z., Xu, Y., Shuttler, B., Cellulose hydrolysis in evolving substrate morphologies II: numerical results and analysis, Biotechnology and Bioengineering, 2009 Oct 1;104(2):275-89 | Research Area: Characterization and Modeling | |
| 06/01/2010 | Zhou | Cellulose hydrolysis in evolving substrate morphologies III: time scale analysis | Biotechnology and Bioengineering | Zhou, W., Xu, Y., Schuttler, H.B., Cellulose hydrolysis in evolving substrate morphologies III:time scale analysis, Biotechnology and Bioengineering, Volume 107, Issue 2, pp 224-234 | Research Area: Characterization and Modeling | 10.1002/bit.22814 |
| 08/05/2010 | Zhou | Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein−Protein Interaction Data View Document |
Journal of Proteome Research | Zhou, C., Yin, Y.B., Dam, P., Xu, Y., Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein-Protein Interaction Data, Journal of Proteome Research, Volume 9, Issue 10, pp 5025-5037, 2010. | Research Area: Characterization and Modeling | 10.1021/pr100249c |
| 03/04/2010 | Zhou | GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems View Document |
BMC Microbiology | Zhou, F., Chen, H., Xu, Y, GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis system, 2010 March; 10:69 | Research Area: Characterization and Modeling | 10.1186/1471-2180-10-69 |
| 06/01/2011 | Zhou | Developmental Analysis of a Medicago truncatula smooth leaf margin1 Mutant Reveals Context-Dependent Effects on Compound Leaf development View Document |
The Plant Cell | Zhou, Chuanen, Han, Lu, Hou, Chunyan, Metelli, Allessandra, Qi, Liying, Tadege, Million, Mysore, Kirankumar S., Wang, Zeng-Yu, Developmental Analysis of a Medicago truncatula smooth leaf margin1 Mutant Reveals Context-Dependent Effects on Compound Leaf development, The Plant Cell, 23(6): 2106-2124, 2011. | Research Area: Biomass Formation and Modification | 10.1105/tpc.111.085464 |
| 01/01/2009 | Zhu | Direct quantitative determination of adsorbed cellulase on lignocellulosic biomass with its application to study cellulase desorption for potential recycling View Document |
Analyst | Zhiguang Zhu, Noppadon Sathitsuksanoha and Y.-H. Percival Zhang, Direct quantitative determination of adsorbed cellulase on lignocellulosic biomass with its application to study cellulase desorption for potential recycling, Analyst, 2009 1347:2267-2272 | Research Area: Biomass Deconstruction and Conversion | 10.1039/b906065k |
| 04/22/2011 | Zhu | Maltodextrin-Powered Enzymatic Fuel Cell though a Non-Natural Enzymatic Pathway View Document |
Journal of Power Sources | Zhu, Zhiguang, Wang, Yiran, Minteer Shelley D., Zhang, Y.H. Percival, Maltodextrin-Powered Enzymatic Fuel Cell though a Non-Natural Enzymatic Pathway, Journal of Power Sources, 196(18): 7505-7509, 2011. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.jpowsour.2011.04.038 |
| 04/15/2013 | Zhu | Isolation and diversity analysis of resistance gene homologues from switchgrass | G3: Genes, Genomes, Genetics | Zhu, Q., Bennetzen, J.L., Smith, S.M., Isolation and diversity analysis of resistance gene homologues from switchgrass, G3: Genes, Genomes, Genetics, 2013 | Research Area: Biomass Formation and Modification | 10.1534/g3.112.005447 |
| 07/01/2009 | Zhu | Comparative study of corn stover pretreated by dilute acid and cellulose solvent‐based lignocellulose fractionation: Enzymatic hydrolysis, supramolecular structure, and substrate accessibility View Document |
Biotechnology and Bioengineering | Zhu, Z. G., Sathitsuksanoh, N., Vinzant, T., Schell, D. J., McMillan, J. D., Zhang, Y. H. P., Comparative Study of Corn Stover Pretreated by Dilute Acid and Cellulose Solvent-Based Lignocellulose Fractionation: Enzymatic Hydrolysis, Supramolecular Structure, and Substrate Accessibility, Biotechnology and Bioengineering, (2009), Volume 103(4), 715-724 | Research Area: Biomass Deconstruction and Conversion | 10.1039/b906065k |
| 04/11/2012 | Zhu | Deep oxidation of glucose in enzymatic fuel cells through a synthetic enzymatic pathway containing a cascade of two thermostable dehydrogenases View Document |
Biosensors and Bioelectronics | Zhu, Z., Sun, F., Zhang, X., Zhang, Y.-H.P., Deep oxidation of glucose in enzymatic fuel cells through a synthetic enzymatic pathway containing a cascade of two thermostable dehydrogenases, Biosensors and Bioelectronics, in press, 2012. | Research Area: Biomass Deconstruction and Conversion | 10.1016/j.bios.2012.04.001 |
| 06/01/2010 | Zhu | Virus-Induced Gene Silencing Offers a Functional Genomics Platform for Studying Plant Cell Wall Formation | Molecular Plant | Zhu X, Pattathil S, Mazumder K, Brehm A, Hahn MG, Dinesh-Kumar SP, Joshi CP., Virus-Induced Gene Silencing Offers a Functional Genomics Plantform for Studying Plant Cell Wall Formation, Molecular Plant, Volume 3, Issue 5, pp 818-833, 2010. | Research Area: Characterization and Modeling | 10.1093/mp/ssq023 |
| 01/01/2009 | Zhulin (Jouline) | It Is Computation Time for Bacteriology! View Document |
Journal of Bacteriology | Zhulin, Igor B., It Is Computation Time for Bacteriology!, Journal of Bacteriology, January 2009, p. 20-22; Volume 191, No. 1 | Research Area: Biomass Formation and Modification | 10.1128/JB.01491-08 |
| 10/04/2010 | Ziebell | Increase in 4-coumaryl alcohol units during lignification in alfalfa (Medicago sativa) alters the extractability and molecular weight of lignin View Document |
Journal of Biological Chemistry | Ziebell, A., Gracom, K., Katahira, R., Chen, F., Pu, Y. Q., Ragauskas, A., Dixon, R. A., Davis, M., Increase in 4-coumaryl alcohol units during lignification in alfalfa (Medicago sativa) alters the extractability and molecular weight of lignin, The Journal of Biological Chemistry, 285(50), 38961-38968, 2010. | Research Area: Characterization and Modeling | 10.1074/jbs.M110.137315 |